Browse Element(s) Details


Os.54931.1.S1_at

Description gb:AK107124.1
DB_XREF= gi:32992333
TID=Os.54931.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B09, full insert sequence.
FL= gb:AK107124.1 gb:AK107329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3432011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34240OsAffx.18513.1.S1_at11/1110+17947169..17947957hypothetical protein
LOC_Os10g34260OsAffx.30146.1.S1_s_at11/1110+17952008..17952761hypothetical protein
LOC_Os10g34260OsAffx.30146.2.S1_x_at8/1110+17952008..17952761hypothetical protein
LOC_Os10g34270Os.46661.1.S1_s_at11/1110+17955861..17956823expressed protein
LOC_Os10g34280OsAffx.30666.1.S1_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30666.1.S1_x_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30667.1.S1_at1/1110+17958467..17958872hypothetical protein
LOC_Os10g34290Os.54089.2.S1_at1/1110+17961030..17964570retrotransposon protein, putative, unclassified
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g34320Os.54931.1.S2_at11/1110+17971833..17975139expressed protein
LOC_Os10g34320Os.54931.1.S1_at11/1110+17971833..17975139expressed protein
LOC_Os10g34330OsAffx.30668.1.S1_at10/1110+17975392..17977020hypothetical protein
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54931.1.S1_at--196--4931Chr10:17974068..17974092 (25 bp)
GCTTGCTTTGTGCACCGAGTGAGCA
LOC_Os10g34320
Os.54931.1.S1_at--501--1511Chr10:17974047..17974071 (25 bp)
AGCAGCAGGGTTGTCACAGTCGCGC
LOC_Os10g34320
Os.54931.1.S1_at--343--1151Chr10:17974030..17974054 (25 bp)
AGTCGCGCACTCCATATCAAAGGAC
LOC_Os10g34320
Os.54931.1.S1_at--931--2811Chr10:17973870..17973894 (25 bp)
AAGATTGAGGTTGTGCTGCGTGCAA
LOC_Os10g34320
Os.54931.1.S1_at--692--9031Chr10:17972695..17972719 (25 bp)
TGCACTGGCTATGCAGCATTCTCAA
LOC_Os10g34320
Os.54931.1.S1_at--208--4951Chr10:17972680..17972704 (25 bp)
GCATTCTCAATCTCACTGATGGCTA
LOC_Os10g34320
Os.54931.1.S1_at--822--851Chr10:17972662..17972686 (25 bp)
ATGGCTAAACTATTCATCCGCATGA
LOC_Os10g34320
Os.54931.1.S1_at--481--3531Chr10:17972648..17972672 (25 bp)
CATCCGCATGACTCCTACTAGAAAT
LOC_Os10g34320
Os.54931.1.S1_at--825--6011Chr10:17972610..17972634 (25 bp)
GAGAGTTTCTGTTACTACATGGACT
LOC_Os10g34320
Os.54931.1.S1_at--426--4191Chr10:17972550..17972574 (25 bp)
CCCTCTGTGTGCAAACTTTGGGTCA
LOC_Os10g34320
Os.54931.1.S1_at--901--3591Chr10:17972535..17972559 (25 bp)
CTTTGGGTCAACACTTTTTTGTCAT
LOC_Os10g34320
Target Sequence 
GCTTGCTTTGTGCACCGAGTGAGCAGCAGGGTTGTCACAGTCGCGCACTCCATATCAAAGGACATGAAGTTTGATGTCGG
TTCAAGGAAAGGTATGAAGGCGTGTGCAGCGGTTGGGGCATTGCTTGCAAAACGTGCAATAGAGGATGATATTCACAATG
CGATTTATACACCAAGGAAAGGAGATAGGATTGAAGGGAAGATTGAGGTTGTGCTGCGTGCAATTATTGATAATGGGGTT
GAAGTTAAGGTGAAACTCAAGCAAAGGAAGCCAACAAAGAATGCACTGGCTATGCAGCATTCTCAATCTCACTGATGGCT
AAACTATTCATCCGCATGACTCCTACTAGAAATGCTCAGAAGTCATGAGAGTTTCTGTTACTACATGGACTGGAAGTCTG
GAAGAGCTGGTGCTGCTGGGGCACCACCCTCTGTGTGCAAACTTTGGGTCAACACTTTTTTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis