Browse Element(s) Details


Os.24902.1.S1_at

Description gb:CA763009
DB_XREF= gi:25807048
DB_XREF=BR060012B10D03.ab1
CLONE=BR060012B10D03.ab1
TID=Os.24902.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane-associated salt-inducible protein (OSJNBa0012L23.56), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g343109/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34230Os.46895.1.S1_at11/1110+17940722..17944919Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os10g34240OsAffx.18513.1.S1_at11/1110+17947169..17947957hypothetical protein
LOC_Os10g34260OsAffx.30146.1.S1_s_at11/1110+17952008..17952761hypothetical protein
LOC_Os10g34260OsAffx.30146.2.S1_x_at8/1110+17952008..17952761hypothetical protein
LOC_Os10g34270Os.46661.1.S1_s_at11/1110+17955861..17956823expressed protein
LOC_Os10g34280OsAffx.30666.1.S1_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30666.1.S1_x_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30667.1.S1_at1/1110+17958467..17958872hypothetical protein
LOC_Os10g34290Os.54089.2.S1_at1/1110+17961030..17964570retrotransposon protein, putative, unclassified
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g34320Os.54931.1.S2_at11/1110+17971833..17975139expressed protein
LOC_Os10g34320Os.54931.1.S1_at11/1110+17971833..17975139expressed protein
LOC_Os10g34330OsAffx.30668.1.S1_at10/1110+17975392..17977020hypothetical protein
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24902.1.S1_at--179--7431Chr10:17968950..17968974 (25 bp)
GTGTTCATCAAGTATTTCTGCCAGA
LOC_Os10g34310
Os.24902.1.S1_at--946--7131Chr10:17968874..17968898 (25 bp)
GTCTAGTTCCAAACGGGATCACTTA
LOC_Os10g34310
Os.24902.1.S1_at--68--10051Chr10:17968801..17968825 (25 bp)
TAGAGGGTGCACTGTCTCACAAGCT
LOC_Os10g34310
Os.24902.1.S1_at--726--7152Chr06:8447315..8447334 (20 bp)
GTCTCACAAGCTTCTGAAAACCCAG
NONE
Os.24902.1.S1_at--161--5531Chr10:17968773..17968797 (25 bp)
GAAAACCCAGCATCATCCTGAGAAG
LOC_Os10g34310
Os.24902.1.S1_at--699--3051Chr10:17968585..17968609 (25 bp)
AATCTATGACCTTCATCAAGCAAGC
LOC_Os10g34310
Os.24902.1.S1_at--29--3851NONE
CTGCAGATAGTTTACGGTCTCTTGT
NONE
Os.24902.1.S1_at--840--7811Chr10:17968377..17968401 (25 bp)
GGTCTCTTGTGTAAATTTCTTATCC
LOC_Os10g34310
Os.24902.1.S1_at--468--10151Chr10:17968357..17968381 (25 bp)
TATCCCATCTATTGTTAATGCCCAT
LOC_Os10g34310
Os.24902.1.S1_at--1145--1471Chr10:17968305..17968329 (25 bp)
AGCAATAGCAATGTCCTCACCTGTT
LOC_Os10g34310
Os.24902.1.S1_at--1027--4271NONE
CCTCACCTGTTACGAATGGACTAGA
NONE
Target Sequence 
GTGTTCATCAAGTATTTCTGCCAGATAGGNAAGATGGATGAANGCTAATGATCTACTCAATGAGATGTTGGACAAATGTC
TAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGC
ACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGNNNNNAATCTATGACCTTCATCAAGCAAGCATTCGCA
ATTGGNAGNTAAATGAAACAATGCTGGCAANCTGGAGTACCNTGATTGNGCTCATAATGGANATGGTCAGCTAGTATTCN
CCATGGCTTTTNAAGATGGGCCTGGCCCNTTGATTNTGGCCANTNGAGCATCTAGTCTAGGTAAGACTAACGTACCAAAG
TAACTGCAGATAGTTTACGGTCTCTTGTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGA
TTGCAATCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis