Browse Element(s) Details


Os.46895.1.S1_at

Description gb:AK103272.1
DB_XREF= gi:32988481
TID=Os.46895.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytokinin oxidase (OSJNBa0012L23.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124I10, full insert sequence.
FL= gb:AK103272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3423011/11Cytokinin dehydrogenase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34200Os.23628.1.A1_at10/1110+17915021..17917746expressed protein
LOC_Os10g34220Os.46662.2.S1_x_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.2.S1_s_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.1.S1_at11/1110+17928520..17932946expressed protein
LOC_Os10g34230Os.46895.1.S1_at11/1110+17940722..17944919Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os10g34240OsAffx.18513.1.S1_at11/1110+17947169..17947957hypothetical protein
LOC_Os10g34260OsAffx.30146.1.S1_s_at11/1110+17952008..17952761hypothetical protein
LOC_Os10g34260OsAffx.30146.2.S1_x_at8/1110+17952008..17952761hypothetical protein
LOC_Os10g34270Os.46661.1.S1_s_at11/1110+17955861..17956823expressed protein
LOC_Os10g34280OsAffx.30666.1.S1_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30666.1.S1_x_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30667.1.S1_at1/1110+17958467..17958872hypothetical protein
LOC_Os10g34290Os.54089.2.S1_at1/1110+17961030..17964570retrotransposon protein, putative, unclassified
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046420
GO:0009823biological_processcytokinin catabolism
GO:0005773cellular_componentvacuole
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46895.1.S1_at--531--871Chr10:17944497..17944521 (25 bp)
AGGCCCGGTTCGACCCGAGGTGCAT
LOC_Os10g34230
Os.46895.1.S1_at--237--3471Chr10:17944530..17944554 (25 bp)
CAGGCCAGGGTATATTCCCCAGGGA
LOC_Os10g34230
Os.46895.1.S1_at--756--8471Chr10:17944570..17944594 (25 bp)
TGGCGCATTTGCAAGCTATAGCTGA
LOC_Os10g34230
Os.46895.1.S1_at--946--9171Chr10:17944640..17944664 (25 bp)
TGCCGTGACAGCTGGTGGTACAATA
LOC_Os10g34230
Os.46895.1.S1_at--178--3711Chr10:17944694..17944718 (25 bp)
CTAGGAGGGAGATCTTGTTCTTTCT
LOC_Os10g34230
Os.46895.1.S1_at--614--6491Chr10:17944723..17944747 (25 bp)
GATAGCTTTCTTTTCTGCTTCGATT
LOC_Os10g34230
Os.46895.1.S1_at--224--191Chr10:17944745..17944769 (25 bp)
ATTTGAGGCCGGCATCGTTTTGGTT
LOC_Os10g34230
Os.46895.1.S1_at--15--8811Chr10:17944793..17944817 (25 bp)
TGATTTTGAACGGATCCTCGGTGGT
LOC_Os10g34230
Os.46895.1.S1_at--174--6451Chr10:17944821..17944845 (25 bp)
GATCACCATCATCACTGGGAATTTT
LOC_Os10g34230
Os.46895.1.S1_at--973--10231Chr10:17944843..17944867 (25 bp)
TTTGGAACTTTGTACAGGCTGAGGA
LOC_Os10g34230
Os.46895.1.S1_at--1011--5371Chr10:17944866..17944890 (25 bp)
GAAGCAAGAACAGCTCTAGGGCGAA
LOC_Os10g34230
Target Sequence 
AGGCCCGGTTCGACCCGAGGTGCATCCTCGGGCCAGGCCAGGGTATATTCCCCAGGGACAGCAGCAGCAGCAATGGCGCA
TTTGCAAGCTATAGCTGACACGAGAAAGTGCAGTGTAGTGCTGTGCTGTGCCGTGCCGTGCCGTGCCGTGACAGCTGGTG
GTACAATAAGAGGGGGACATAGGATAGGCAGGCGAGGCTAGGAGGGAGATCTTGTTCTTTCTTTTCGATAGCTTTCTTTT
CTGCTTCGATTTGAGGCCGGCATCGTTTTGGTTGGTTGATGTGGTTGGGCGGGGGTTGATTTTGAACGGATCCTCGGTGG
TGGTGATCACCATCATCACTGGGAATTTTGGAACTTTGTACAGGCTGAGGAAGCAAGAACAGCTCTAGGGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis