Browse Element(s) Details

Os.46662.2.S1_s_at

Description

gb:NM_197056.1
DB_XREF= gi:37535471
TID=Os.46662.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46662 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0012L23.52), mRNA.
PROD=putative receptor-like protein kinase
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g28104	11/11	Protein kinase domain containing protein, expressed
LOC_Os10g34220	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g28030	NA	NA	11	+	15616968..15618851	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28040	Os.46314.3.S1_at	3/11	11	+	15621198..15621550	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28050	OsAffx.23366.2.S1_s_at	1/11	11	+	15623381..15626975	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28060	OsAffx.7230.1.S1_at	11/11	11	+	15627698..15628866	Cytochrome P450 71C4, putative
LOC_Os11g28070	OsAffx.19046.1.S1_at	10/11	11	+	15633400..15635999	hypothetical protein
LOC_Os11g28080	NA	NA	11	+	15640679..15640945	hypothetical protein
LOC_Os11g28104	Os.46662.2.S1_s_at	11/11	11	+	15643037..15659723	Protein kinase domain containing protein, expressed
LOC_Os11g28104	OsAffx.31176.1.S1_x_at	10/11	11	+	15643037..15659723	Protein kinase domain containing protein, expressed
LOC_Os11g28104	Os.26767.1.A1_at	9/11	11	+	15643037..15659723	Protein kinase domain containing protein, expressed
LOC_Os11g28104	Os.46662.2.S1_x_at	2/11	11	+	15643037..15659723	Protein kinase domain containing protein, expressed
LOC_Os11g28104	OsAffx.21209.1.S1_at	1/11	11	+	15643037..15659723	Protein kinase domain containing protein, expressed
LOC_Os11g28130	Os.25910.1.S1_s_at	11/11	11	+	15661535..15662533	expressed protein
LOC_Os11g28130	Os.25910.1.S1_at	11/11	11	+	15661535..15662533	expressed protein
LOC_Os11g28140	OsAffx.10637.1.S1_s_at	11/11	11	+	15673104..15676790	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140	OsAffx.10637.3.S1_s_at	11/11	11	+	15673104..15676790	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140	OsAffx.10637.4.S1_s_at	8/11	11	+	15673104..15676790	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150	OsAffx.32056.1.S1_at	11/11	11	+	15678059..15683474	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150	OsAffx.32056.1.S1_x_at	11/11	11	+	15678059..15683474	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150	OsAffx.30536.1.S1_x_at	1/11	11	+	15678059..15683474	transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46662.2.S1_s_at--616--497	2	Chr10:17931603..17931627 (25 bp)	GCATCATACACCGTGACATTAAATC	LOC_Os10g34220
Os.46662.2.S1_s_at--964--33	2	Chr10:17931608..17931632 (25 bp)	ATACACCGTGACATTAAATCTAGCA	LOC_Os10g34220
Os.46662.2.S1_s_at--887--13	3	Chr10:17931620..17931644 (25 bp)	ATTAAATCTAGCAATGTTCTTCTTG	LOC_Os10g34220
Os.46662.2.S1_s_at--615--125	2	Chr10:17931663..17931687 (25 bp)	AGATTGCTGATTTCGGTTTAGCAAG	LOC_Os10g34220
Os.46662.2.S1_s_at--1068--911	2	Chr10:17931667..17931691 (25 bp)	TGCTGATTTCGGTTTAGCAAGGCTC	LOC_Os10g34220
Os.46662.2.S1_s_at--897--71	2	Chr10:17931699..17931723 (25 bp)	ATGATCATAGTCATCTCAGCACTAA	LOC_Os10g34220
Os.46662.2.S1_s_at--631--1027	2	Chr10:17931725..17931818 (25 bp)	TTTGCAGGAACATTGGGTTACACAG	LOC_Os10g34220
Os.46662.2.S1_s_at--281--349	2	Chr10:17931729..17931822 (25 bp)	CAGGAACATTGGGTTACACAGCTCC	LOC_Os10g34220
Os.46662.2.S1_s_at--1008--93	2	Chr10:17931905..17931929 (25 bp)	AGGAAGCTCAATGATGCAAGGCTGG	LOC_Os10g34220
Os.46662.2.S1_s_at--1027--899	2	Chr10:17931952..17932336 (25 bp)	TGAATGGGCCTGGAAGCTTTATGAA	LOC_Os10g34220
Os.46662.2.S1_s_at--269--219	2	Chr10:17932338..17932362 (25 bp)	ACAACAACTTGATTGAATTGGTGGA	LOC_Os10g34220

Target Sequence

GCATCATACACCGTGACATTAAATCTAGCAATGTTCTTCTTGATGATGAGTTTCAGCCAAAGATTGCTGATTTCGGTTTA
GCAAGGCTCCTACCTGATGATCATAGTCATCTCAGCACTAAATTTGCAGGAACATTGGGTTACACAGCTCCTGAATATGC
CATCCATGGGCAACTCTCTGAGAAGGTTGACACATACAGCTTTGGTGTTGTCGTTTTGGAAATAATAAGTGGCAGGAAGC
TCAATGATGCAAGGCTGGATCCTGATAGCCAGTACCTACTTGAATGGGCCTGGAAGCTTTATGAAAACAACAACTTGATT
GAATTGGTGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis