Browse Element(s) Details


OsAffx.7230.1.S1_at

Description tigr:9639.m02528
TID=OsAffx.7230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2806011/11Cytochrome P450 71C4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28019Os.18389.1.S1_at7/1111+15605577..15605884NA
LOC_Os11g28030NANA11+15616968..15618851transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28040Os.46314.3.S1_at3/1111+15621198..15621550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28050OsAffx.23366.2.S1_s_at1/1111+15623381..15626975transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28060OsAffx.7230.1.S1_at11/1111+15627698..15628866Cytochrome P450 71C4, putative
LOC_Os11g28070OsAffx.19046.1.S1_at10/1111+15633400..15635999hypothetical protein
LOC_Os11g28080NANA11+15640679..15640945hypothetical protein
LOC_Os11g28104Os.46662.2.S1_s_at11/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.31176.1.S1_x_at10/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.26767.1.A1_at9/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.46662.2.S1_x_at2/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.21209.1.S1_at1/1111+15643037..15659723Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7230.1.S1_at--873--391Chr11:15628268..15628292 (25 bp)
ATCAGCTTTGGTCCTTGAATTCACC
LOC_Os11g28060
OsAffx.7230.1.S1_at--128--9011Chr11:15628253..15628277 (25 bp)
TGAATTCACCATCGCAGAGCTCATG
LOC_Os11g28060
OsAffx.7230.1.S1_at--415--851Chr11:15628135..15628159 (25 bp)
ATGGCTTACCTACGAGCGGTCATTA
LOC_Os11g28060
OsAffx.7230.1.S1_at--1034--4391Chr11:15628070..15628094 (25 bp)
GCCACACATCTCCATGGATGACTGT
LOC_Os11g28060
OsAffx.7230.1.S1_at--426--531Chr11:15628027..15628051 (25 bp)
ATCCCTTCAGGGACACGAGTCTTGG
LOC_Os11g28060
OsAffx.7230.1.S1_at--465--6091Chr11:15628011..15628035 (25 bp)
GAGTCTTGGTCAATGTTTGGGCCAT
LOC_Os11g28060
OsAffx.7230.1.S1_at--482--7291Chr11:15627946..15627970 (25 bp)
GTGCCTGAGAGGTTCATTGACAGCA
LOC_Os11g28060
OsAffx.7230.1.S1_at--94--4771Chr11:15627910..15627934 (25 bp)
GCTGCAAATGTCAACTTCACGGAGA
LOC_Os11g28060
OsAffx.7230.1.S1_at--452--6871Chr11:15627830..15627854 (25 bp)
GTTTGGCATCGCTGTTGTTGAGATC
LOC_Os11g28060
OsAffx.7230.1.S1_at--469--5591Chr11:15627785..15627809 (25 bp)
GAAATTCGATTGGACGCTTCCACCA
LOC_Os11g28060
OsAffx.7230.1.S1_at--698--5791Chr11:15627773..15627797 (25 bp)
GACGCTTCCACCAGGAACGGAGATT
LOC_Os11g28060
Target Sequence 
ATCAGCTTTGGTCCTTGAATTCACCATCGCAGAGCTCATGCAGAGGCCACGCATGTTGAAGAAGCTGCAAGATGAGGTGA
GGGCATGCATCCCAAAAGGGCAAAAAATTGTTAGCGAAGTTGACATAAACAACATGGCTTACCTACGAGCGGTCATTAAA
GAAGGGATTAGATTGCACCCGGTGGCGCCTGTCCTTGCGCCACACATCTCCATGGATGACTGTAACATCGATGGGTATAT
GATCCCTTCAGGGACACGAGTCTTGGTCAATGTTTGGGCCATTGGTAGGGATCCACGCTTCTGGGAGGACGTGGAGGAGT
TTGTGCCTGAGAGGTTCATTGACAGCATGAGTAGTGCTGCTGCAAATGTCAACTTCACGGAGAATGATTATCAGTACTTG
CCATTTGGTTATGGGCGGAGGATGTGCCCTGGGATGAAGTTTGGCATCGCTGTTGTTGAGATCATGTTAGCAAATCTTAT
GTGGAAATTCGATTGGACGCTTCCACCAGGAACGGAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis