Browse Element(s) Details


Os.26767.1.A1_at

Description gb:CB633345
DB_XREF= gi:29628334
DB_XREF=OSIIEb12C04.r
CLONE=OSIIEb12C04
TID=Os.26767.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26767 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176008.1 (A.thaliana) wall-associated kinase 2, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g281049/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28030NANA11+15616968..15618851transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28040Os.46314.3.S1_at3/1111+15621198..15621550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28050OsAffx.23366.2.S1_s_at1/1111+15623381..15626975transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28060OsAffx.7230.1.S1_at11/1111+15627698..15628866Cytochrome P450 71C4, putative
LOC_Os11g28070OsAffx.19046.1.S1_at10/1111+15633400..15635999hypothetical protein
LOC_Os11g28080NANA11+15640679..15640945hypothetical protein
LOC_Os11g28104Os.46662.2.S1_s_at11/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.31176.1.S1_x_at10/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.26767.1.A1_at9/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.46662.2.S1_x_at2/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.21209.1.S1_at1/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28130Os.25910.1.S1_s_at11/1111+15661535..15662533expressed protein
LOC_Os11g28130Os.25910.1.S1_at11/1111+15661535..15662533expressed protein
LOC_Os11g28140OsAffx.10637.1.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.3.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.4.S1_s_at8/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_x_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.30536.1.S1_x_at1/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26767.1.A1_at--812--7711Chr11:15643551..15643575 (25 bp)
GGTGGACAGATCATTAGACCCAGAA
LOC_Os11g28104
Os.26767.1.A1_at--430--8051Chr11:15643494..15643518 (25 bp)
GGAGATTGCCCTTCTGTGCACTCAA
LOC_Os11g28104
Os.26767.1.A1_at--416--8691Chr11:15643480..15643504 (25 bp)
TGTGCACTCAATCGGCTGTCACATC
LOC_Os11g28104
Os.26767.1.A1_at--192--391NONE
ATCACGGCCAATGATGTCGGAGGTA
NONE
Os.26767.1.A1_at--656--5991Chr11:15643389..15643413 (25 bp)
GAGACCGACTTTTATCGATGCAACT
LOC_Os11g28104
Os.26767.1.A1_at--322--4991Chr11:15643322..15643346 (25 bp)
GCATCCAAAGCTACTGTTTCGATAT
LOC_Os11g28104
Os.26767.1.A1_at--257--9391Chr11:15643304..15643328 (25 bp)
TCGATATCACAACTTTCAGCCAGGT
LOC_Os11g28104
Os.26767.1.A1_at--101--10131Chr11:15643220..15643244 (25 bp)
TATGTATCTATGTTCTTCACGTCAA
LOC_Os11g28104
Os.26767.1.A1_at--639--3651NONE
CTTCTCTCTTTTCCTATTCATATAA
NONE
Os.26767.1.A1_at--857--10151Chr11:15643120..15643144 (25 bp)
TATAATCGCGACTTGCATGGCATTT
LOC_Os11g28104
Os.26767.1.A1_at--3--8512Chr05:25684287..25684565 (25 bp)
TGGCATTTACCATGTCTGTTCTGAC
NONE
Target Sequence 
GGTGGACAGATCATTAGACCCAGAAGAATACAATCACGAGGAGGTGAAAAGAACAATNGGAGATTGCCCTTCTGTGCACT
CAATCGGCTGTCACATCACGGCCAATGATGTCGGAGGTAGNTTGNGTTGTTGCTGACAANAAATNCTCTAGAGTTCCAGC
CCACGAGACCGACTTTTATCGATGCAACTCGNANAGTGCNAGGTGAAACATCAACCTCCAGTTCATCTTCTGCATCCAAA
GCTACTGTTTCGATATCACAACTTTCAGCCAGGTGAAAGGTGTTCTAAATAAATGTGCTTATTTTGATTGTGTGTAAATG
CTATTTATTTGTATATGTATCTATGTTCTTCACGTCAACAAGTGGATATTTACTTGTGAGTTGCACGTAGAACATGTGTT
CTCNTTTTTTTTTCTTCTCTCTTTTCCTATTCATATAATCGCGACTTGCATGGCATTTACCATGTCTGTTCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26767.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis