Browse Element(s) Details


OsAffx.21209.1.S1_at

Description gb:NM_193551.1
DB_XREF= gi:34914185
GEN=OSJNBb0049O23.4
TID=OsAffx.21209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0049O23.4 (OSJNBb0049O23.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g383599/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g281041/11Protein kinase domain containing protein, expressed
LOC_Os09g192291/11Protein kinase domain containing protein, expressed
LOC_Os06g254391/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38330NANA1+21832879..21835491retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38340OsAffx.15069.1.S1_at1/111+21841702..21847161retrotransposon protein, putative, unclassified
LOC_Os01g38340OsAffx.17577.1.S1_at1/111+21841702..21847161retrotransposon protein, putative, unclassified
LOC_Os01g38359Os.10310.1.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.10310.2.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.21209.1.S1_at9/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.17446.1.S1_at2/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.7398.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.47760.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.8967.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.57395.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38380OsAffx.23554.3.S1_s_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38380OsAffx.23554.3.S1_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38390OsAffx.23554.2.S1_s_at11/111+21884103..21884800hypothetical protein
LOC_Os01g38400OsAffx.26082.1.S1_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.26082.1.S1_x_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.16960.1.S1_at1/111+21897056..21897970retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009611biological_processresponse to wounding
GO:0016020cellular_componentmembrane
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005516molecular_functioncalmodulin binding
GO:0005524molecular_functionATP binding
GO:0005528molecular_functionFK506 binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21209.1.S1_at--633--6211Chr01:21856577..21856601 (25 bp)
GATCGATTGGTTGAACCGCCGAAAT
LOC_Os01g38359
OsAffx.21209.1.S1_at--567--8911Chr02:18671543..18672053 (25 bp)
TGACCGCCGACCGTTTCCAAGGATT
NONE
OsAffx.21209.1.S1_at--1061--657123Chr12:7864842..7864866 (25 bp)
GATTCGGCACCCATTATTTTGCTCA
NONE
OsAffx.21209.1.S1_at--340--4831Chr01:21858246..21858270 (25 bp)
GCTCACATCAAATACATCGTTGTCG
LOC_Os01g38359
OsAffx.21209.1.S1_at--768--491Chr01:21858261..21858285 (25 bp)
ATCGTTGTCGTCAAAACTGTTTCTA
LOC_Os01g38359
OsAffx.21209.1.S1_at--719--2531NONE
AACTGTTTCTAAGGATTCGCGCGTC
NONE
OsAffx.21209.1.S1_at--744--1251Chr01:21860202..21860221 (20 bp)
AGATAGACTCATTAGGGACCTGCCA
LOC_Os01g38359
OsAffx.21209.1.S1_at--258--5411Chr01:21860132..21860156 (25 bp)
GAACCAGGACTCACGGTTGGTGTCA
LOC_Os01g38359
OsAffx.21209.1.S1_at--1031--131Chr01:21860272..21860296 (25 bp)
ATTAAAGCTCATTAGGGACCTGCCA
LOC_Os01g38359
OsAffx.21209.1.S1_at--201--8091Chr01:21860309..21860333 (25 bp)
GGACTCATTAGGGAGCTGCCAAGTT
LOC_Os01g38359
OsAffx.21209.1.S1_at--731--4371Chr01:21860326..21860350 (25 bp)
GCCAAGTTTCGAACCAGGACTCACG
LOC_Os01g38359
Target Sequence 
GATCGATTGGTTGAACCGCCGAAATCACCTGCCACTGCCTGTCGCCGCCGCCGGTCTGACCGCCTACATGCCGCCAGTCT
GACCGCCGACCGTTTCCAAGGATTCGGCACCCATTATTTTGCTCACATCAAATACATCGTTGTCGTCAAAACTGTTTCTA
AGGATTCGCGCGTCCGCCGCCTGCCGCCGCCCCACGCACTTCCCCGGCCGTCTACCACCCGCATGCGCCGACGAAGAAAA
GATAGACTCATTAGGGACCTGCCAAGTATCGAACCAGGACTCACGGTTGGTGTCAAAAAAAAATACCCGTGGAGATTAAA
GCTCATTAGGGACCTGCCAAGTATCGAACCAGGACTCATTAGGGAGCTGCCAAGTTTCGAACCAGGACTCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis