Browse Element(s) Details


OsAffx.17446.1.S1_at

Description tigr:9636.m04165
TID=OsAffx.17446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4105411/11hypothetical protein
LOC_Os01g383592/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40990Os.18230.1.S1_at9/118+25798050..25801190Leucine Rich Repeat family protein, expressed
LOC_Os08g41000OsAffx.6098.1.S1_at11/118+25801751..25803349expressed protein
LOC_Os08g41010Os.18529.2.S1_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41010Os.18529.1.S1_a_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41020NANA8+25810938..25815327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g41030Os.55500.1.S1_at11/118+25817415..25818314AP2 domain containing protein, expressed
LOC_Os08g41040Os.17091.1.S1_at11/118+25820114..25821925expressed protein
LOC_Os08g41054OsAffx.17446.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_x_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41070OsAffx.28903.2.S1_x_at11/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.2.S1_at10/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.1.S1_x_at7/118+25826008..25833843expressed protein
LOC_Os08g41070Os.50232.1.S1_x_at1/118+25826008..25833843expressed protein
LOC_Os08g41080Os.57155.1.S1_at3/118+25838216..25838446expressed protein
LOC_Os08g41090Os.17125.1.S1_at11/118+25838921..25842038Peroxidase family protein, expressed
LOC_Os08g41100Os.9173.1.S1_at11/118+25842624..25844598Chitinase class I family protein, expressed
LOC_Os08g41110Os.17116.1.S1_at11/118+25846641..25851174Chaperone protein dnaJ 10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17446.1.S1_at--922--9956Chr08:25824718..25824742 (25 bp)
TACCTCGAGGTACAATATGCTGGAC
LOC_Os08g41054
OsAffx.17446.1.S1_at--1096--10135Chr08:25824733..25824757 (25 bp)
TATGCTGGACTGGAGCAATGCTCTT
LOC_Os08g41054
OsAffx.17446.1.S1_at--88--9411Chr08:25824807..25824831 (25 bp)
TCGTACCCCTAGTCTACGCAATTTC
LOC_Os08g41054
OsAffx.17446.1.S1_at--498--2791Chr08:25824836..25824860 (25 bp)
AAGAGGAGAGAGTCCCTACACCAAG
LOC_Os08g41054
OsAffx.17446.1.S1_at--441--771Chr08:25824873..25824897 (25 bp)
ATGTCTGGGTCGGAGATTTAGCCTT
LOC_Os08g41054
OsAffx.17446.1.S1_at--1061--10311Chr08:25824889..25824913 (25 bp)
TTTAGCCTTGGAGACAAACCCACAT
LOC_Os08g41054
OsAffx.17446.1.S1_at--157--2091Chr08:25824910..25824934 (25 bp)
ACATATCACAGTGGCCCTCGTGGAG
LOC_Os08g41054
OsAffx.17446.1.S1_at--430--8531Chr08:25824930..25824954 (25 bp)
TGGAGCAGCTTGTGGCCTTTATGGA
LOC_Os08g41054
OsAffx.17446.1.S1_at--190--9471Chr08:25825104..25825128 (25 bp)
TCTGGGCGCCAGGAAAATGCAAACT
LOC_Os08g41054
OsAffx.17446.1.S1_at--51--8171Chr08:25825115..25825139 (25 bp)
GGAAAATGCAAACTACACGCCTGGT
LOC_Os08g41054
OsAffx.17446.1.S1_at--460--2171Chr08:25825129..25825153 (25 bp)
ACACGCCTGGTTCATCATCCTGAAT
LOC_Os08g41054
Target Sequence 
TACCTCGAGGTACAATATGCTGGACTGGAGCAATGCTCTTAAAGTATACATGCAAGCATGGATGGAAGGGCGAAGACCCA
AAGACCTCCTCGTACCCCTAGTCTACGCAATTTCTAAGAAGAGGAGAGAGTCCCTACACCAAGGAAAGGAGAATAATGTC
TGGGTCGGAGATTTAGCCTTGGAGACAAACCCACATATCACAGTGGCCCTCGTGGAGCAGCTTGTGGCCTTTATGGACCG
CAGTCCGTGGGTCTGGGCGCCAGGAAAATGCAAACTACACGCCTGGTTCATCATCCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis