Browse Element(s) Details


Os.9173.1.S1_at

Description gb:AK106190.1
DB_XREF= gi:32991399
TID=Os.9173.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E01, full insert sequence.
FL= gb:AK106190.1 gb:AK104718.1 gb:AK102814.1 gb:AK060080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4110011/11Chitinase class I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41030Os.55500.1.S1_at11/118+25817415..25818314AP2 domain containing protein, expressed
LOC_Os08g41040Os.17091.1.S1_at11/118+25820114..25821925expressed protein
LOC_Os08g41054OsAffx.17446.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_x_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41070OsAffx.28903.2.S1_x_at11/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.2.S1_at10/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.1.S1_x_at7/118+25826008..25833843expressed protein
LOC_Os08g41070Os.50232.1.S1_x_at1/118+25826008..25833843expressed protein
LOC_Os08g41080Os.57155.1.S1_at3/118+25838216..25838446expressed protein
LOC_Os08g41090Os.17125.1.S1_at11/118+25838921..25842038Peroxidase family protein, expressed
LOC_Os08g41100Os.9173.1.S1_at11/118+25842624..25844598Chitinase class I family protein, expressed
LOC_Os08g41110Os.17116.1.S1_at11/118+25846641..25851174Chaperone protein dnaJ 10, putative, expressed
LOC_Os08g41120NANA8+25851411..25852436BTB/POZ domain containing protein
LOC_Os08g41130NANA8+25855367..25858078transposon protein, putative, Mutator sub-class
LOC_Os08g41140OsAffx.22940.2.S1_s_at11/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.1.S1_s_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_x_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.3.S1_x_at9/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.3.S1_x_at8/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.18.S1_x_at6/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.31552.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41150OsAffx.21997.5.S1_at11/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41150OsAffx.21997.3.S1_x_at1/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41160Os.47463.1.S1_x_at4/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41160Os.14491.2.S1_x_at3/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9173.1.S1_at--401--4611Chr08:25843203..25843227 (25 bp)
GCGACCCTAGCATTTGAAGCAGCAA
LOC_Os08g41100
Os.9173.1.S1_at--597--5491Chr08:25843054..25843078 (25 bp)
GAACATCCTGTATGGCGATCTCATC
LOC_Os08g41100
Os.9173.1.S1_at--74--491Chr08:25843032..25843056 (25 bp)
ATCTGTGGTCAAGGCTCCATCGATA
LOC_Os08g41100
Os.9173.1.S1_at--986--6311Chr08:25843006..25843030 (25 bp)
GATGAACGTCATTGTATCCCACTAC
LOC_Os08g41100
Os.9173.1.S1_at--721--3711Chr08:25842985..25843009 (25 bp)
CTACCAACATTATCTCGACCTGATG
LOC_Os08g41100
Os.9173.1.S1_at--779--31Chr08:25842926..25842950 (25 bp)
ATTGTGCTGACCAGGTGGCGTTCAA
LOC_Os08g41100
Os.9173.1.S1_at--375--8531Chr08:25842884..25842908 (25 bp)
TGGACTCCTAAGCAATCTGTGTTAT
LOC_Os08g41100
Os.9173.1.S1_at--897--10251Chr08:25842836..25842860 (25 bp)
TTTGAGGCACAGACAGCTAGCTTCC
LOC_Os08g41100
Os.9173.1.S1_at--425--10331Chr08:25842782..25842806 (25 bp)
TTTAATAGCTCCCAAGTACCACCTG
LOC_Os08g41100
Os.9173.1.S1_at--557--6971Chr08:25842767..25842791 (25 bp)
GTACCACCTGTGTTTGTTTGCGAAA
LOC_Os08g41100
Os.9173.1.S1_at--74--7071Chr08:25842726..25842750 (25 bp)
GTAAGTGTCCACTATGTTCTCTCAT
LOC_Os08g41100
Target Sequence 
GCGACCCTAGCATTTGAAGCAGCAATCTGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATT
CGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGT
ATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAAGATGAACGTCATTGTATCCCACTACCAACATTATCTCGACCTG
ATGGGTGTTGGTAGTGACAAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTT
GGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAA
GAAAAGCGTATACNTGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTA
AGTGTCCACTATGTTCTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis