Browse Element(s) Details


Os.55500.1.S1_at

Description gb:AK108208.1
DB_XREF= gi:32993417
TID=Os.55500.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D07, full insert sequence.
FL= gb:AK108208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4103011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40980Os.28943.1.S1_x_at2/118+25792730..25795954retrotransposon protein, putative, unclassified
LOC_Os08g40990Os.18230.1.S1_at9/118+25798050..25801190Leucine Rich Repeat family protein, expressed
LOC_Os08g41000OsAffx.6098.1.S1_at11/118+25801751..25803349expressed protein
LOC_Os08g41010Os.18529.2.S1_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41010Os.18529.1.S1_a_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41020NANA8+25810938..25815327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g41030Os.55500.1.S1_at11/118+25817415..25818314AP2 domain containing protein, expressed
LOC_Os08g41040Os.17091.1.S1_at11/118+25820114..25821925expressed protein
LOC_Os08g41054OsAffx.17446.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_x_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41070OsAffx.28903.2.S1_x_at11/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.2.S1_at10/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.1.S1_x_at7/118+25826008..25833843expressed protein
LOC_Os08g41070Os.50232.1.S1_x_at1/118+25826008..25833843expressed protein
LOC_Os08g41080Os.57155.1.S1_at3/118+25838216..25838446expressed protein
LOC_Os08g41090Os.17125.1.S1_at11/118+25838921..25842038Peroxidase family protein, expressed
LOC_Os08g41100Os.9173.1.S1_at11/118+25842624..25844598Chitinase class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55500.1.S1_at--967--1891Chr08:25817759..25817783 (25 bp)
ACGTCAGGGCCATCGCCGAGAGGTA
LOC_Os08g41030
Os.55500.1.S1_at--877--10471Chr08:25817919..25817943 (25 bp)
TTACTACTGCAACGAGCCTGACACC
LOC_Os08g41030
Os.55500.1.S1_at--90--4471Chr08:25817978..25818002 (25 bp)
GCCTCCTCTCCATGGACATCGAAGA
LOC_Os08g41030
Os.55500.1.S1_at--592--2791Chr08:25817999..25818023 (25 bp)
AAGAGGTCGCCGCTTTGATCGCCAT
LOC_Os08g41030
Os.55500.1.S1_at--665--10771Chr08:25818013..25818037 (25 bp)
TTGATCGCCATTGTTCAGCAAGGAG
LOC_Os08g41030
Os.55500.1.S1_at--1006--6011Chr08:25818035..25818059 (25 bp)
GAGAGTGACCATATCTACAACTTCT
LOC_Os08g41030
Os.55500.1.S1_at--1115--4851Chr08:25818066..25818090 (25 bp)
GCTAGTTACACCTTCTATGTAGCAT
LOC_Os08g41030
Os.55500.1.S1_at--6--3511Chr08:25818088..25818112 (25 bp)
CATGTGTACTATGCACTTTTGTGGT
LOC_Os08g41030
Os.55500.1.S1_at--978--6611Chr08:25818116..25818140 (25 bp)
GTTGTGCTGTCCTAATGGTGTAACT
LOC_Os08g41030
Os.55500.1.S1_at--143--10071Chr08:25818207..25818231 (25 bp)
TAGTCTGTACTTGGTCATGCACCTT
LOC_Os08g41030
Os.55500.1.S1_at--702--651Chr08:25818223..25818247 (25 bp)
ATGCACCTTGTGTATGATCCTTGTG
LOC_Os08g41030
Target Sequence 
ACGTCAGGGCCATCGCCGAGAGGTACGCCCACGACGTCGGCTCCGTCCTGTTCCGCCCGCTCCCTCCGCCGCCGCCGCCC
GTCGCCGCCGCCGCCGTCCCCGTGTTCGCCGCACCTGCACCGCCCATGGCGCCGGCGCCGGCCAACCATGCTGCCGATCC
TTACTACTGCAACGAGCCTGACACCACCACAGACGAGGACGTCATGGCTGCGGCTGACCGCCTCCTCTCCATGGACATCG
AAGAGGTCGCCGCTTTGATCGCCATTGTTCAGCAAGGAGAGTGACCATATCTACAACTTCTTAGCTAGCTAGTTACACCT
TCTATGTAGCATGTGTACTATGCACTTTTGTGGTTGTGTTGTGCTGTCCTAATGGTGTAACTAGCCATATCAAGGAAGAC
ATGCATGATCTAGAGTCTAGAGTACTCTAGCCATGGAATAAATTAACTTAGTCTGTACTTGGTCATGCACCTTGTGTATG
ATCCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis