Browse Element(s) Details


OsAffx.6098.1.S1_at

Description tigr:9636.m04154
TID=OsAffx.6098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4100011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40940Os.18712.1.S1_at11/118+25776547..25777822expressed protein
LOC_Os08g40950OsAffx.17445.1.S1_at11/118+25781229..25781666hypothetical protein
LOC_Os08g40960NANA8+25783313..25788051retrotransposon protein, putative, unclassified
LOC_Os08g40970OsAffx.22896.1.S1_x_at1/118+25790299..25792106retrotransposon protein, putative, unclassified
LOC_Os08g40980Os.28943.1.S1_x_at2/118+25792730..25795954retrotransposon protein, putative, unclassified
LOC_Os08g40990Os.18230.1.S1_at9/118+25798050..25801190Leucine Rich Repeat family protein, expressed
LOC_Os08g41000OsAffx.6098.1.S1_at11/118+25801751..25803349expressed protein
LOC_Os08g41010Os.18529.2.S1_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41010Os.18529.1.S1_a_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41020NANA8+25810938..25815327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g41030Os.55500.1.S1_at11/118+25817415..25818314AP2 domain containing protein, expressed
LOC_Os08g41040Os.17091.1.S1_at11/118+25820114..25821925expressed protein
LOC_Os08g41054OsAffx.17446.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_x_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41070OsAffx.28903.2.S1_x_at11/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.2.S1_at10/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.1.S1_x_at7/118+25826008..25833843expressed protein
LOC_Os08g41070Os.50232.1.S1_x_at1/118+25826008..25833843expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6098.1.S1_at--461--9431Chr08:25802292..25802316 (25 bp)
TCGGTGCAGCTCAGCGGCTTCTTCA
LOC_Os08g41000
OsAffx.6098.1.S1_at--251--4631Chr08:25802250..25802274 (25 bp)
GCGAGGATCACGCACAGAGCGCAAA
LOC_Os08g41000
OsAffx.6098.1.S1_at--806--2311Chr08:25802228..25802252 (25 bp)
AAAGGATCGTGTCCATCGCGAGCCA
LOC_Os08g41000
OsAffx.6098.1.S1_at--154--9351Chr08:25802213..25802237 (25 bp)
TCGCGAGCCAGTGGCACATGAGCAT
LOC_Os08g41000
OsAffx.6098.1.S1_at--131--4711Chr08:25802079..25802103 (25 bp)
GCGGCGTGCGCCTACAGAAGCAGAC
LOC_Os08g41000
OsAffx.6098.1.S1_at--166--9871Chr08:25802070..25802091 (22 bp)
TACAGAAGCAGACACGCCCTCGTGA
LOC_Os08g41000
OsAffx.6098.1.S1_at--1037--2151Chr08:25801944..25801968 (25 bp)
ACAGCGGCGGGATCACACTGTTCGG
LOC_Os08g41000
OsAffx.6098.1.S1_at--714--431Chr08:25801888..25801912 (25 bp)
ATCTTCGCCTTCGAGATGACTCTCG
LOC_Os08g41000
OsAffx.6098.1.S1_at--13--691Chr08:25801873..25801897 (25 bp)
ATGACTCTCGTGCTATGGATTCTAA
LOC_Os08g41000
OsAffx.6098.1.S1_at--458--7931Chr08:25801857..25801881 (25 bp)
GGATTCTAAGCAAAGTCCTCTCTTA
LOC_Os08g41000
OsAffx.6098.1.S1_at--983--2431Chr08:25801805..25801829 (25 bp)
AAAATTTCCTCACCAGTTTGCAAGA
LOC_Os08g41000
Target Sequence 
TCGGTGCAGCTCAGCGGCTTCTTCATGTGCCTCTTCGGCGCGGCGAGGATCACGCACAGAGCGCAAAGGATCGTGTCCAT
CGCGAGCCAGTGGCACATGAGCATGGAGGCCGTGGCGCACCACGCCAAGTCGGCGCCATTGCCGGCGGCGCCCAGCTCGT
CGGCCAGCGACGTGGACGCGCCGCACCAACCGGAGCTCGGGACGACGACGACGGCGGCGTGCGCCTACAGAAGCAGACAC
GCCCTCGTGACGTACCTGTGCCACAACAGCGGCGGGATCACACTGTTCGGGTTCACGCTGGACAGGGGATTGCTCCACAC
CATCTTCGCCTTCGAGATGACTCTCGTGCTATGGATTCTAAGCAAAGTCCTCTCTTAATTAATTATTAGCTCGTGTTAAT
TGTTAAAATTTCCTCACCAGTTTGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis