Browse Element(s) Details


OsAffx.17445.1.S1_at

Description tigr:9636.m04149
TID=OsAffx.17445.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4095011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40920NANA8+25757172..25758170hypothetical protein
LOC_Os08g40930Os.3414.1.A1_at9/118+25760725..25767733isoamylase, putative, expressed
LOC_Os08g40940Os.18712.1.S1_at11/118+25776547..25777822expressed protein
LOC_Os08g40950OsAffx.17445.1.S1_at11/118+25781229..25781666hypothetical protein
LOC_Os08g40960NANA8+25783313..25788051retrotransposon protein, putative, unclassified
LOC_Os08g40970OsAffx.22896.1.S1_x_at1/118+25790299..25792106retrotransposon protein, putative, unclassified
LOC_Os08g40980Os.28943.1.S1_x_at2/118+25792730..25795954retrotransposon protein, putative, unclassified
LOC_Os08g40990Os.18230.1.S1_at9/118+25798050..25801190Leucine Rich Repeat family protein, expressed
LOC_Os08g41000OsAffx.6098.1.S1_at11/118+25801751..25803349expressed protein
LOC_Os08g41010Os.18529.2.S1_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41010Os.18529.1.S1_a_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17445.1.S1_at--146--1391Chr08:25781607..25781631 (25 bp)
AGACGCTATTGCCAACCTCGTCACG
LOC_Os08g40950
OsAffx.17445.1.S1_at--818--8491Chr08:25781550..25781574 (25 bp)
TGGCAAGACCGATGATCTTCCCGCC
LOC_Os08g40950
OsAffx.17445.1.S1_at--119--2771Chr08:25781500..25781524 (25 bp)
AAGACGCCATCACGCTGTCAGACAA
LOC_Os08g40950
OsAffx.17445.1.S1_at--254--1831Chr08:25781489..25781513 (25 bp)
ACGCTGTCAGACAACACAATCACCA
LOC_Os08g40950
OsAffx.17445.1.S1_at--544--10551Chr08:25781451..25781475 (25 bp)
TTCTACCGTGGTTGTCCAGCCGGGC
LOC_Os08g40950
OsAffx.17445.1.S1_at--100--6271Chr08:25781420..25781444 (25 bp)
GATGTGGTGCTTGCCACCACGGCAC
LOC_Os08g40950
OsAffx.17445.1.S1_at--1135--7271Chr08:25781386..25781410 (25 bp)
GTGCCCAAGACGCAGTGCCAACCAA
LOC_Os08g40950
OsAffx.17445.1.S1_at--468--1131Chr08:25781373..25781397 (25 bp)
AGTGCCAACCAACGTGACACCAGCA
LOC_Os08g40950
OsAffx.17445.1.S1_at--317--1391Chr08:25781319..25781343 (25 bp)
AGACGCATGTGTCTGTTGTCCTCGA
LOC_Os08g40950
OsAffx.17445.1.S1_at--907--10791Chr08:25781304..25781328 (25 bp)
TTGTCCTCGACATGAAAAGCTCTTA
LOC_Os08g40950
OsAffx.17445.1.S1_at--711--2351Chr08:25781289..25781313 (25 bp)
AAAGCTCTTATACCATGCAAGCGTA
LOC_Os08g40950
Target Sequence 
AGACGCTATTGCCAACCTCGTCACGGCGCTTGCTACTGCCCATGCCGCAACAGCCACTGGCAAGACCGATGATCTTCCCG
CCACCCTCACTCAAGCACAGGCGGCCCAAGACGCCATCACGCTGTCAGACAACACAATCACCACGACACCTTCTCCTTCT
ACCGTGGTTGTCCAGCCGGGCGTGCGCGATGTGGTGCTTGCCACCACGGCACCAACGCCTCGTGCCCAAGACGCAGTGCC
AACCAACGTGACACCAGCACTACCTCCGCCTCAGCGTTCCAAGCGTCAAGACGCATGTGTCTGTTGTCCTCGACATGAAA
AGCTCTTATACCATGCAAGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis