Browse Element(s) Details


Os.18712.1.S1_at

Description gb:AK108985.1
DB_XREF= gi:32994194
TID=Os.18712.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-F05, full insert sequence.
FL= gb:AK108985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4094011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40910Os.11112.1.S1_s_at11/118+25755406..25756197expressed protein
LOC_Os08g40920NANA8+25757172..25758170hypothetical protein
LOC_Os08g40930Os.3414.1.A1_at9/118+25760725..25767733isoamylase, putative, expressed
LOC_Os08g40940Os.18712.1.S1_at11/118+25776547..25777822expressed protein
LOC_Os08g40950OsAffx.17445.1.S1_at11/118+25781229..25781666hypothetical protein
LOC_Os08g40960NANA8+25783313..25788051retrotransposon protein, putative, unclassified
LOC_Os08g40970OsAffx.22896.1.S1_x_at1/118+25790299..25792106retrotransposon protein, putative, unclassified
LOC_Os08g40980Os.28943.1.S1_x_at2/118+25792730..25795954retrotransposon protein, putative, unclassified
LOC_Os08g40990Os.18230.1.S1_at9/118+25798050..25801190Leucine Rich Repeat family protein, expressed
LOC_Os08g41000OsAffx.6098.1.S1_at11/118+25801751..25803349expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18712.1.S1_at--741--3951Chr08:25777233..25777257 (25 bp)
CGGTGACCAAGGACTACGTCGCCGA
LOC_Os08g40940
Os.18712.1.S1_at--566--4091Chr08:25777255..25777279 (25 bp)
CGACGTGCTCGAGAGAGGATTCCTC
LOC_Os08g40940
Os.18712.1.S1_at--17--9631Chr08:25777371..25777395 (25 bp)
TCATGATCCCGATACTGCACAGCAT
LOC_Os08g40940
Os.18712.1.S1_at--377--9031Chr08:25777386..25777410 (25 bp)
TGCACAGCATCGACGTGGTTTACGT
LOC_Os08g40940
Os.18712.1.S1_at--356--6011Chr08:25777469..25777493 (25 bp)
GAGAGCGTCATGCAAGTTTGACCAA
LOC_Os08g40940
Os.18712.1.S1_at--850--3131Chr08:25777491..25777515 (25 bp)
CAATTTCGGACACGAGTCGGACTCT
LOC_Os08g40940
Os.18712.1.S1_at--1139--111Chr08:25777599..25777623 (25 bp)
ATTCTTGATCCAACAGTGACTGCAC
LOC_Os08g40940
Os.18712.1.S1_at--1110--1971Chr08:25777617..25777641 (25 bp)
ACTGCACCTGTGTTGTGTGTGTCAT
LOC_Os08g40940
Os.18712.1.S1_at--609--8731Chr08:25777636..25777660 (25 bp)
TGTCATGTTTGTGGCTTGGATTGTT
LOC_Os08g40940
Os.18712.1.S1_at--484--3511Chr08:25777681..25777705 (25 bp)
CATGTTTAGCATGGCACGGCCGGGA
LOC_Os08g40940
Os.18712.1.S1_at--531--5991Chr08:25777726..25777750 (25 bp)
GAGACTCACTGATCGGTCAACTGTT
LOC_Os08g40940
Target Sequence 
CGGTGACCAAGGACTACGTCGCCGACGTGCTCGAGAGAGGATTCCTCCTCAACCTCGTCGGAAACCGGCTGTTCTACGCC
GGCGTGCCGCTTCTCCTGTGGATCTTCGGCCCGGTCTTGGCTTGCCTCTGCTCCGTCGTCATGATCCCGATACTGCACAG
CATCGACGTGGTTTACGTCGATGGGAGCAGCAAGGGCGAGGCCAACGCCAGAGTGGAGATGGTGTACGAGAGCGATGAGA
GCGTCATGCAAGTTTGACCAATTTCGGACACGAGTCGGACTCTNTAACCTGNCTACNCTNACGGAGAATATGTGGTGGTG
CTCTCGTCTCGTCCTNCAAACTCGATCTTGAAGAAAAATGCGGGCAATTCTTGATCCAACAGTGACTGCACCTGTGTTGT
GTGTGTCATGTTTGTGGCTTGGATTGTTTTGAGTATTCTTATTCAAGACATGTTTAGCATGGCACGGCCGGGAGAGTACT
TGGTGCTGTAACAGAGACTCACTGATCGGTCAACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis