Browse Element(s) Details


Os.11112.1.S1_s_at

Description gb:BI797495
DB_XREF= gi:15849219
DB_XREF=H078F07
CLONE=H078F07
TID=Os.11112.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11112 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4091011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40910Os.11112.1.S1_s_at11/118+25755406..25756197expressed protein
LOC_Os08g40920NANA8+25757172..25758170hypothetical protein
LOC_Os08g40930Os.3414.1.A1_at9/118+25760725..25767733isoamylase, putative, expressed
LOC_Os08g40940Os.18712.1.S1_at11/118+25776547..25777822expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11112.1.S1_s_at--988--491Chr08:25755498..25755522 (25 bp)
ATCGGGCAGGCGAGCCCGGTGATGT
LOC_Os08g40910
Os.11112.1.S1_s_at--139--8391Chr08:25755490..25755514 (25 bp)
GGCGAGCCCGGTGATGTGGTGGTGA
LOC_Os08g40910
Os.11112.1.S1_s_at--1058--8611Chr08:25755474..25755498 (25 bp)
TGGTGGTGAAATTGGGAAATCTTTT
LOC_Os08g40910
Os.11112.1.S1_s_at--347--5591Chr08:25755459..25755483 (25 bp)
GAAATCTTTTCACCCCGTGTACTCT
LOC_Os08g40910
Os.11112.1.S1_s_at--350--10351Chr08:25755453..25755477 (25 bp)
TTTTCACCCCGTGTACTCTGTTGCT
LOC_Os08g40910
Os.11112.1.S1_s_at--733--9671Chr08:25755450..25755474 (25 bp)
TCACCCCGTGTACTCTGTTGCTGTA
LOC_Os08g40910
Os.11112.1.S1_s_at--34--1811Chr08:25755448..25755472 (25 bp)
ACCCCGTGTACTCTGTTGCTGTACT
LOC_Os08g40910
Os.11112.1.S1_s_at--1159--4231Chr08:25755445..25755469 (25 bp)
CCGTGTACTCTGTTGCTGTACTGTA
LOC_Os08g40910
Os.11112.1.S1_s_at--1125--7431Chr08:25755443..25755467 (25 bp)
GTGTACTCTGTTGCTGTACTGTAGA
LOC_Os08g40910
Os.11112.1.S1_s_at--336--2011Chr08:25755439..25755463 (25 bp)
ACTCTGTTGCTGTACTGTAGAAATC
LOC_Os08g40910
Os.11112.1.S1_s_at--208--8811Chr08:25755435..25755459 (25 bp)
TGTTGCTGTACTGTAGAAATCAGTT
LOC_Os08g40910
Target Sequence 
ATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGA
AATCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11112.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis