Browse Element(s) Details


Os.10684.1.S1_at

Description gb:AK069912.1
DB_XREF= gi:32979936
TID=Os.10684.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037G11, full insert sequence.
FL= gb:AK069912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4088011/11oligouridylate-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40910Os.11112.1.S1_s_at11/118+25755406..25756197expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0003730molecular_functionmRNA 3'-UTR binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10684.1.S1_at--734--371Chr08:25726711..25726735 (25 bp)
ATCAACCCGTACCAATGGCAGGTGT
LOC_Os08g40880
Os.10684.1.S1_at--585--10591Chr08:25726676..25726700 (25 bp)
TTCTCGGCAGCTGATATCGTAGCAT
LOC_Os08g40880
Os.10684.1.S1_at--591--4991Chr08:25726644..25726668 (25 bp)
GCAACTTACCTTAAGCCAGGTCGCA
LOC_Os08g40880
Os.10684.1.S1_at--1092--3391Chr08:25726601..25726625 (25 bp)
CAGCATGGCCTTGCAGGTCAGGTAT
LOC_Os08g40880
Os.10684.1.S1_at--919--8271Chr08:25726469..25726493 (25 bp)
GGCATTTGTAGTGTTCGGCTTGTTC
LOC_Os08g40880
Os.10684.1.S1_at--376--6691Chr08:25726418..25726442 (25 bp)
GTTCCTATTTTCTGGTTTCTGTACT
LOC_Os08g40880
Os.10684.1.S1_at--679--7011Chr08:25726398..25726422 (25 bp)
GTACTATTTGAGTGAGTGCTCCTCT
LOC_Os08g40880
Os.10684.1.S1_at--371--7891Chr08:25726370..25726394 (25 bp)
GGTTCACTGCTTGTCGCGGAATTGT
LOC_Os08g40880
Os.10684.1.S1_at--623--7211Chr08:25726292..25726316 (25 bp)
GTCGAAGTAGTTCTCGCCTTAACAG
LOC_Os08g40880
Os.10684.1.S1_at--999--6451Chr08:25726229..25726253 (25 bp)
GATCAATGTAACTCTCCTGATGCCC
LOC_Os08g40880
Os.10684.1.S1_at--762--4271Chr08:25726214..25726238 (25 bp)
CCTGATGCCCATCTGAGTATTGATT
LOC_Os08g40880
Target Sequence 
ATCAACCCGTACCAATGGCAGGTGTGCCACANGNTTTCTCGGCAGCTGATATCGTAGCATATCAGAGGCAACTTACCTTA
AGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCCGCAGGGCTTCTTGCTGCTGGCTC
CCAGGCCCTCTACGACGGGTACCCGAANNCCANGTCANTCAGCGCANACNANGCTTATGTACTACAACTANGGTGCTTAA
GGAGGAGGAAGGCATTTGTAGTGTTCGGCTTGTTCGGCGCAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTC
TGTACTATTTGAGTGAGTGCTCCTCTTCCGGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTA
CTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGCCTTAACAGAGTAACAGATGTATTTGATGGAATGTGA
ATTTGCGATTGATCAATGTAACTCTCCTGATGCCCATCTGAGTATTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis