Browse Element(s) Details


Os.37268.1.S1_at

Description gb:AK120052.1
DB_XREF= gi:37989675
TID=Os.37268.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-032-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000I20, full insert sequence.
FL= gb:AK120052.1 gb:AK059686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4086011/11pseudouridine synthase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004730molecular_functionpseudouridylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37268.1.S1_at--1026--2491Chr08:25723714..25723738 (25 bp)
AACATCGCGAAATTCCTGAGCAGCA
LOC_Os08g40860
Os.37268.1.S1_at--1091--2431Chr08:25723754..25723778 (25 bp)
AAAATGGTGCTCCATGGTCCAAGGA
LOC_Os08g40860
Os.37268.1.S1_at--26--1451Chr08:25723778..25723802 (25 bp)
AGAAGCCCAATCTCCTCAGGTTCAT
LOC_Os08g40860
Os.37268.1.S1_at--521--5231Chr08:25723836..25723860 (25 bp)
GAATATCATGTCCTCATATCTGGTG
LOC_Os08g40860
Os.37268.1.S1_at--1157--2771Chr08:25723862..25723886 (25 bp)
AAGAGCATCTCCATGTGCCATTGTT
LOC_Os08g40860
Os.37268.1.S1_at--915--2715Chr11:4009766..4009839 (24 bp)
AAGCAGCTAGGCTTCTAGTTCATTA
NONE
Os.37268.1.S1_at--311--10191Chr08:25723961..25723985 (25 bp)
TATAGCTACATCTTCTCACAGTCTG
LOC_Os08g40860
Os.37268.1.S1_at--1111--7171Chr08:25723981..25724005 (25 bp)
GTCTGGGTGAGAATCTGTTCTGCAC
LOC_Os08g40860
Os.37268.1.S1_at--446--5091Chr08:25724002..25724026 (25 bp)
GCACTGCTTCGGGAGCCTAAGATTT
LOC_Os08g40860
Os.37268.1.S1_at--794--9791Chr08:25724034..25724058 (25 bp)
TAAGCTGCCGCTGCTAGAAGCTCAG
LOC_Os08g40860
Os.37268.1.S1_at--907--9931Chr08:25724240..25724264 (25 bp)
TACGTTGCAGCATTTTACTACTAAT
LOC_Os08g40860
Target Sequence 
AACATCGCGAAATTCCTGAGCAGCAATGGAGAATGGCATGAAAATGGTGCTCCATGGTCCAAGGAGAAGCCCAATCTCCT
CAGGTTCATCGCACCGATGCCTGCACATATGAAAATTAGCTGGAATATCATGTCCTCATATCTGGTGTAAGAGCATCTCC
ATGTGCCATTGTTGGTAACATCAAGTTTCATTCCATGTAGTTTTACTGAGAAGCAGCTAGGCTTCTAGTTCATTATTTTC
TAGATTCTATAGCTACATCTTCTCACAGTCTGGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATA
TAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGNGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCT
GAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAGAGTATACATCCTACCAAAGTTTTAAATCTT
TGTTTCTTTTTTGTAAGCATGATGTAATTCTGAACAATAATTACTGTACGTTGCAGCATTTTACTACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis