Browse Element(s) Details


Os.49085.1.S1_at

Description gb:AK064309.1
DB_XREF= gi:32974327
TID=Os.49085.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B11, full insert sequence.
FL= gb:AK064309.1 gb:AK102428.1 gb:AK119371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4089011/11spermidine synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40910Os.11112.1.S1_s_at11/118+25755406..25756197expressed protein
LOC_Os08g40920NANA8+25757172..25758170hypothetical protein
LOC_Os08g40930Os.3414.1.A1_at9/118+25760725..25767733isoamylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49085.1.S1_at--106--10111Chr08:25736052..25736076 (25 bp)
TATGTGGAGTCAGTGCACCACCGTT
LOC_Os08g40890
Os.49085.1.S1_at--258--231Chr08:25735963..25735987 (25 bp)
ATATTGAATGTTATCCCTCCTGCTG
LOC_Os08g40890
Os.49085.1.S1_at--892--3831Chr08:25735944..25735968 (25 bp)
CTGCTGCAGATGGATCCTTCTACAA
LOC_Os08g40890
Os.49085.1.S1_at--445--1071Chr08:25735919..25735943 (25 bp)
AGGGTTGATTGATGTTCTTCGCCAT
LOC_Os08g40890
Os.49085.1.S1_at--30--10651Chr08:25735902..25735926 (25 bp)
TTCGCCATGTCTTCTCTGAGTTGTA
LOC_Os08g40890
Os.49085.1.S1_at--441--10791Chr08:25735842..25735866 (25 bp)
TTGTTGCCACAGTGTCACCAGTTGA
LOC_Os08g40890
Os.49085.1.S1_at--394--6871Chr08:25735715..25735739 (25 bp)
GTATTGTTGCTCCAATTGGCCTCCA
LOC_Os08g40890
Os.49085.1.S1_at--744--6851Chr08:25735656..25735680 (25 bp)
GTTTGCATACTATTCAGACGGCTAT
LOC_Os08g40890
Os.49085.1.S1_at--1010--1191Chr08:25735631..25735655 (25 bp)
AGTATTTCACTGTTCTTATCTCAAA
LOC_Os08g40890
Os.49085.1.S1_at--686--1451Chr08:25735603..25735627 (25 bp)
AGAAGTCCATTTGAGCCAGCCACTG
LOC_Os08g40890
Os.49085.1.S1_at--46--4831Chr08:25735555..25735579 (25 bp)
GCTCTTCCTGAGTATTTACTGCTGT
LOC_Os08g40890
Target Sequence 
TATGTGGAGTCAGTGCACCACCGTTGGAGATGACAAAGGAAAGCATTCTTCTTGCTTCACGCACGATCCTACATCGTGAT
GGGGCTTTCATATTGAATGTTATCCCTCCTGCTGCAGATGGATCCTTCTACAAAGGGTTGATTGATGTTCTTCGCCATGT
CTTCTCTGAGTTGTATGAAATAAATGTCAGTAATGGTGAAAATTTTGTCCTTGTTGCCACAGTGTCACCAGTTGAAACTA
TCCTTGCTGATAGTTCAGGAAGCGTTCTGACAAAATTGAGGAAATTAGCTGGGGATTTTTTGGAACACATAACGAGAATC
TGACATTCCAAGTCACTGTATTGTTGCTCCAATTGGCCTCCACAACATCTGTCCAGAAGTTATTTTGTTTGGATTTGTTT
GCATACTATTCAGACGGCTATAGTATTTCACTGTTCTTATCTCAAATGAAGAAGTCCATTTGAGCCAGCCACTGGATTTG
ATACCCCAGATTCCTCAGCTCTTCCTGAGTATTTACTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis