Browse Element(s) Details


Os.14971.1.S1_at

Description gb:AK063556.1
DB_XREF= gi:32973574
TID=Os.14971.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-E10, full insert sequence.
FL= gb:AK063556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4085011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14971.1.S1_at--84--31Chr08:25716408..25716595 (25 bp)
ATTGGAGCTCTTTCAGGTCTAACTG
LOC_Os08g40850
Os.14971.1.S1_at--1147--2831Chr08:25716382..25716406 (25 bp)
AAGTACAATAAGCTTCCCTCTGGAA
LOC_Os08g40850
Os.14971.1.S1_at--783--8151Chr08:25716350..25716374 (25 bp)
GGAAGCGGCTTATGGTTGGAACCCT
LOC_Os08g40850
Os.14971.1.S1_at--1068--4671Chr08:25716297..25716321 (25 bp)
GCGGCCTTAGCTGAGGTGTTCCAAG
LOC_Os08g40850
Os.14971.1.S1_at--1121--8231Chr08:25716267..25716291 (25 bp)
GGCATCAAGGGACTTTACCGCGGAT
LOC_Os08g40850
Os.14971.1.S1_at--489--5171Chr08:25716237..25716261 (25 bp)
GCAAGCTCCCTGAAGGTGATGCCGA
LOC_Os08g40850
Os.14971.1.S1_at--240--2931Chr08:25716177..25716201 (25 bp)
AAGGACATTCTTTTGGCTCCAGAGC
LOC_Os08g40850
Os.14971.1.S1_at--610--2031Chr08:25716140..25716164 (25 bp)
ACTAGCAGTCTAGCATGCCTGGAAT
LOC_Os08g40850
Os.14971.1.S1_at--953--10551Chr08:25716039..25716063 (25 bp)
TTCTTCTTTGAAATCCCACACATGC
LOC_Os08g40850
Os.14971.1.S1_at--761--3291Chr08:25716023..25716047 (25 bp)
CACACATGCCAGTCATCTAGCTAAG
LOC_Os08g40850
Os.14971.1.S1_at--276--5051Chr08:25715910..25715934 (25 bp)
GCAGACATTCCATGCCATGTGGCTT
LOC_Os08g40850
Target Sequence 
ATTGGAGCTCTTTCAGGTCTAACTGCAAGTACAATAAGCTTCCCTCTGGAAGTGGCGAGGAAGCGGCTTATGGTTGGAAC
CCTGCAAGGGAAATGCCCGCCCCACATGATCGCGGCCTTAGCTGAGGTGTTCCAAGAGGAGGGCATCAAGGGACTTTACC
GCGGATGGGCCGCAAGCTCCCTGAAGGTGATGCCGACCTCCGGCATTACCTGGATGTTCTATGAGGCATGGAAGGACATT
CTTTTGGCTCCAGAGCTGCACACCTAGCACTAGCAGTCTAGCATGCCTGGAATTGTTCAACATGGCAGGCATTGCTACAG
AATAAATTTCTTGTGCTNTGAGGCAGTGTGGNATTTCCTTCTTTTTTTTTTCTTCTTTGAAATCCCACACATGCCAGTCA
TCTAGCTAAGAGGCCATTTTGTGCCAATGATTAGAANCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAAGCCAG
TAATTGTTGACAAGGGGGGCAGACATTCCATGCCATGTGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis