Browse Element(s) Details


OsAffx.17444.1.S1_at

Description tigr:9636.m04138
TID=OsAffx.17444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Exo70 exocyst complex subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4084011/11Exo70 exocyst complex subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40820Os.53388.2.S1_at11/118+25684918..25690623expressed protein
LOC_Os08g40820Os.53388.1.S1_x_at11/118+25684918..25690623expressed protein
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17444.1.S1_at--206--8371Chr08:25713076..25713100 (25 bp)
GGCGTCGCACGTCATGGCCATGAAT
LOC_Os08g40840
OsAffx.17444.1.S1_at--662--7111Chr08:25713066..25713090 (25 bp)
GTCATGGCCATGAATTCCTACTGGT
LOC_Os08g40840
OsAffx.17444.1.S1_at--615--9251Chr08:25713051..25713075 (25 bp)
TCCTACTGGTACATCTACATGCGCG
LOC_Os08g40840
OsAffx.17444.1.S1_at--671--8591Chr08:25713045..25713069 (25 bp)
TGGTACATCTACATGCGCGCCAGGG
LOC_Os08g40840
OsAffx.17444.1.S1_at--1004--7651Chr08:25713022..25713046 (25 bp)
GGGATCGGAGCTAGCCAGCCTCGTC
LOC_Os08g40840
OsAffx.17444.1.S1_at--144--3931Chr08:25712948..25712972 (25 bp)
CGTGGGAGTACCAGGACGCGGCGTG
LOC_Os08g40840
OsAffx.17444.1.S1_at--97--5111Chr08:25712800..25712824 (25 bp)
GCACGGCGCGGAGTACAAGATACCG
LOC_Os08g40840
OsAffx.17444.1.S1_at--401--8031Chr08:25712791..25712815 (25 bp)
GGAGTACAAGATACCGGACGGCGAC
LOC_Os08g40840
OsAffx.17444.1.S1_at--69--2231Chr08:25712786..25712810 (25 bp)
ACAAGATACCGGACGGCGACCTCCG
LOC_Os08g40840
OsAffx.17444.1.S1_at--741--4471Chr08:25712715..25712739 (25 bp)
GCCGGGTTCCTCAGGGCGAACGACA
LOC_Os08g40840
OsAffx.17444.1.S1_at--856--10671Chr08:25712709..25712733 (25 bp)
TTCCTCAGGGCGAACGACAGCGCGG
LOC_Os08g40840
Target Sequence 
GGCGTCGCACGTCATGGCCATGAATTCCTACTGGTACATCTACATGCGCGCCAGGGGATCGGAGCTAGCCAGCCTCGTCG
GCGACGACACGATGCGGCGGCGGTACAAGGCGTCGGCGGAGGAGGCGGCGTGGGAGTACCAGGACGCGGCGTGGGGCCCG
CTCGTCCGCCTCGTCAGCGGCAGCAGCTCCGGCGCGGCCAAGGCGTGGCCGTCGCCGGAGGAGGCGAGGGAGAAGGCGGC
GGCGTTCGCCGACGCGCTGGAGGAGCGGGCGCGGCGGCACGGCGCGGAGTACAAGATACCGGACGGCGACCTCCGGGAGC
AGATCAAGGCGGCGGCGGCGAAGGCGGTGCGCGGCGCCTACGCCGGGTTCCTCAGGGCGAACGACAGCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis