Browse Element(s) Details


Os.3414.1.A1_at

Description gb:CR282303
DB_XREF= gi:44668869
DB_XREF=CR282303
CLONE=p756a09p3
TID=Os.3414.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3414 (NCBI UniGene Cluster)
UG_TITLE=MRNA for isoamylase, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g409309/11isoamylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40910Os.11112.1.S1_s_at11/118+25755406..25756197expressed protein
LOC_Os08g40920NANA8+25757172..25758170hypothetical protein
LOC_Os08g40930Os.3414.1.A1_at9/118+25760725..25767733isoamylase, putative, expressed
LOC_Os08g40940Os.18712.1.S1_at11/118+25776547..25777822expressed protein
LOC_Os08g40950OsAffx.17445.1.S1_at11/118+25781229..25781666hypothetical protein
LOC_Os08g40960NANA8+25783313..25788051retrotransposon protein, putative, unclassified
LOC_Os08g40970OsAffx.22896.1.S1_x_at1/118+25790299..25792106retrotransposon protein, putative, unclassified
LOC_Os08g40980Os.28943.1.S1_x_at2/118+25792730..25795954retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005983biological_processstarch catabolism
GO:0010021biological_processamylopectin biosynthesis
GO:0004556molecular_functionalpha-amylase activity
GO:0019156molecular_functionisoamylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3414.1.A1_at--1031--1911Chr08:25761505..25761529 (25 bp)
ACGGTTCTGCTCTCTTATGACCAAA
LOC_Os08g40930
Os.3414.1.A1_at--711--5131NONE
GCAAACAATGCGAGTCCCTTGGCCT
NONE
Os.3414.1.A1_at--723--1571Chr08:25761343..25761367 (25 bp)
AGCTCAACGGTTGCATTGGCATGGC
LOC_Os08g40930
Os.3414.1.A1_at--406--10871Chr08:25761328..25761352 (25 bp)
TTGGCATGGCCATCAGCCTGGGAAA
LOC_Os08g40930
Os.3414.1.A1_at--1097--1671Chr08:25761314..25761338 (25 bp)
AGCCTGGGAAACCTGACTGGTCTGA
LOC_Os08g40930
Os.3414.1.A1_at--203--8591Chr08:25761297..25761321 (25 bp)
TGGTCTGAGACAAGCCGTTTCGTGG
LOC_Os08g40930
Os.3414.1.A1_at--1146--891Chr08:25761127..25761151 (25 bp)
AGGCGAGATCTACGTGGCCTTCAAC
LOC_Os08g40930
Os.3414.1.A1_at--259--9191Chr08:25761092..25761116 (25 bp)
TGCCGGCGGTTGTTGGACTCCCAGA
LOC_Os08g40930
Os.3414.1.A1_at--300--311Chr08:25760837..25760861 (25 bp)
ATAGCCCTTTTTGCGTATATGTTGA
LOC_Os08g40930
Os.3414.1.A1_at--1152--2811Chr08:25760813..25760837 (25 bp)
AAGTTGTGCGGTCCTTCAATTTTGA
LOC_Os08g40930
Os.3414.1.A1_at--402--10191NONE
TATATTCATGCGTGTCCTGAGCGGC
NONE
Target Sequence 
ACGGTTCTGCTCTCTTATGACCAAATTCCGCAAACAATGCGAGTCCCTTGGCCTCGCAGACTTCCCAACAGCTCAACGGT
TGCATTGGCATGGCCATCAGCCTGGGAAACCTGACTGGTCTGAGACAAGCCGTTTCGTGGCCTTCTCCANGAAAGATGAA
ACGAAAGGCGAGATCTACGTGGCCTTCAACGCCAGCCATTTGCCGGCGGTTGTTGGACTCCCAGAGCGCCCAGGCTACCG
CTGGGAGCCGCTGGTGGACACAGGCAAGCCAGCGCCTTATGACTTCCTCACCGACGACCTGCCTGATCGTGNTCACGCCG
TCCACCTGTTCTCTCATTTCCTCAACTCCAATCTCTACCCCATGCTCAGCTACTCCTCCATCATCCTTGAATTGCAGCCT
GATGATTGAAAGAACAAAGNATAGCATAGTATAGCAGAGTAAAAAACATATGTTTATAGCCCTTTTTGCGTATATGTTGA
AGTTGTGCGGTCCTTCAATTTTGANNNANNNNNNAANNNNTATATTCATGCGTGTCCTGAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3414.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis