Browse Element(s) Details


OsAffx.28903.1.S1_x_at

Description tigr:9639.m04076
TID=OsAffx.28903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4401411/11helicase, putative
LOC_Os07g446709/11hypothetical protein
LOC_Os08g410707/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43980Os.11563.1.S1_at11/1111+26065476..26067337Peroxidase 1 precursor, putative, expressed
LOC_Os11g43990Os.6129.1.S1_at11/1111+26070342..26075297expressed protein
LOC_Os11g44000OsAffx.7402.1.S1_at11/1111+26076954..26079793hypothetical protein
LOC_Os11g44000OsAffx.31466.1.S1_x_at1/1111+26076954..26079793hypothetical protein
LOC_Os11g44014OsAffx.28903.1.S1_x_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.7403.1.S1_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.28903.2.S1_x_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44014Os.31529.1.S1_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44030OsAffx.7404.1.S1_at11/1111+26105486..26109668expressed protein
LOC_Os11g44040OsAffx.31464.1.S1_at11/1111+26110529..26112322hypothetical protein
LOC_Os11g44050NANA11+26116438..26119362retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28903.1.S1_x_at--30--1212Chr11:26082197..26082221 (25 bp)
AGTTTGATGCTACCTACTCTGGAAA
LOC_Os11g44014
OsAffx.28903.1.S1_x_at--580--8213Chr11:26082088..26082112 (25 bp)
GGAATCAGCCACCAAACAACTTGCA
LOC_Os11g44014
OsAffx.28903.1.S1_x_at--304--5293Chr11:26082057..26082081 (25 bp)
GAAGGGCTAACCACCATGGAACATT
LOC_Os11g44014
OsAffx.28903.1.S1_x_at--437--852Chr11:26081748..26082066 (25 bp)
ATGGAACATTGCAGCCCAGCAATTG
LOC_Os11g44014
OsAffx.28903.1.S1_x_at--51--2633Chr11:26081654..26081678 (25 bp)
AACCGTCAACAGAATTTTCTCCAGG
LOC_Os11g44014
OsAffx.28903.1.S1_x_at--1041--1314Chr02:28292297..28292796 (25 bp)
AGAGGAAAACCAGCTGCAGCAGCCA
NONE
OsAffx.28903.1.S1_x_at--1086--8831Chr11:26081418..26081442 (25 bp)
TGATCAACAGCCATCGGGTCACGAG
LOC_Os11g44014
OsAffx.28903.1.S1_x_at--818--1753Chr11:26080716..26080740 (25 bp)
ACCTGCAAGCAGTTTCCAAGATTAC
LOC_Os11g44014
OsAffx.28903.1.S1_x_at--926--4872Chr11:26080675..26080699 (25 bp)
GCTATTTCTATCACTCTCCAAGGGA
LOC_Os11g44014
OsAffx.28903.1.S1_x_at--640--1692Chr11:26080620..26080644 (25 bp)
AGCCAACTCAAGCTCACGTTGTGAA
LOC_Os11g44014
OsAffx.28903.1.S1_x_at--590--353Chr11:26080584..26080608 (25 bp)
ATAAGCTTCCTCACATGCATATCAT
LOC_Os11g44014
Target Sequence 
AGTTTGATGCTACCTACTCTGGAAAATACAAAGGTAGCAAAGGAATCAGCCACCAAACAACTTGCAACAGATGAAGGGCT
AACCACCATGGAACATTGCAGCCCAGCAATTGCAAACACTATTCAGGTTGCAACAAATCAACTTTATCATTCCCAACAAG
TAGATCTCATCAAGGAAAAACAACCGTCAACAGAATTTTCTCCAGGACAAAATTCTAAGCGCCATAAAAAAGTAACGGAA
ACCTCCCCCAATGGAGAGGAAAACCAGCTGCAGCAGCCAAAGATAGCTGATCAACAGCCATCGGGTCACGAGGAACAGAT
GGACCAACAACCAGAAAAAAATAGGAACCATGAGGCGCAACTCATCCACACCAACTACCTGCAAGCAGTTTCCAAGATTA
CTGCATCCAAATCAACAGCTATTTCTATCACTCTCCAAGGGAAATCATCCACCGACGACCTCTACAAGCTGCAGCCAACT
CAAGCTCACGTTGTGAATTACACGAAAAATAAGCTTCCTCACATGCATATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28903.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis