Browse Element(s) Details


OsAffx.31466.1.S1_x_at

Description tigr:9639.m04094
TID=OsAffx.31466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g440001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43970Os.26546.1.S1_at11/1111+26046155..26052730AAA-type ATPase family protein, putative, expressed
LOC_Os11g43980Os.11563.1.S1_at11/1111+26065476..26067337Peroxidase 1 precursor, putative, expressed
LOC_Os11g43990Os.6129.1.S1_at11/1111+26070342..26075297expressed protein
LOC_Os11g44000OsAffx.7402.1.S1_at11/1111+26076954..26079793hypothetical protein
LOC_Os11g44000OsAffx.31466.1.S1_x_at1/1111+26076954..26079793hypothetical protein
LOC_Os11g44014OsAffx.28903.1.S1_x_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.7403.1.S1_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.28903.2.S1_x_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44014Os.31529.1.S1_at1/1111+26080547..26092483helicase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31466.1.S1_x_at--599--3911Chr11:26173666..26173690 (25 bp)
CTGGACGACCAGAACCAAGAGCTGG
NONE
OsAffx.31466.1.S1_x_at--23--1451Chr11:26173676..26173700 (25 bp)
AGAACCAAGAGCTGGCCAAGAGCAA
NONE
OsAffx.31466.1.S1_x_at--71--4392Chr11:26173680..26173704 (25 bp)
CCAAGAGCTGGCCAAGAGCAAGGAT
NONE
OsAffx.31466.1.S1_x_at--425--8451Chr11:26173689..26173713 (25 bp)
GGCCAAGAGCAAGGATACACCAGCT
NONE
OsAffx.31466.1.S1_x_at--628--5951Chr11:26173695..26173719 (25 bp)
GAGCAAGGATACACCAGCTGATGCT
NONE
OsAffx.31466.1.S1_x_at--241--3391Chr11:26173709..26173733 (25 bp)
CAGCTGATGCTGATCATGAACCGGT
NONE
OsAffx.31466.1.S1_x_at--376--3871Chr11:26173712..26173736 (25 bp)
CTGATGCTGATCATGAACCGGTGGA
NONE
OsAffx.31466.1.S1_x_at--37--6351Chr11:26173714..26173738 (25 bp)
GATGCTGATCATGAACCGGTGGAAG
NONE
OsAffx.31466.1.S1_x_at--148--4251Chr11:26173729..26173753 (25 bp)
CCGGTGGAAGCATCGTCGTCTTCCT
NONE
OsAffx.31466.1.S1_x_at--857--9392Chr11:26173744..26173768 (25 bp)
TCGTCTTCCTCACCAAGGTCGTCGT
NONE
OsAffx.31466.1.S1_x_at--631--1691Chr11:26173755..26173779 (25 bp)
ACCAAGGTCGTCGTCGGTGCCATCG
NONE
Target Sequence 
CTGGACGACCAGAACCAAGAGCTGGCCAAGAGCAAGGATACACCAGCTGATGCTGATCATGAACCGGTGGAAGCATCGTC
GTCTTCCTCACCAAGGTCGTCGTCGGTGCCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31466.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis