Browse Element(s) Details


OsAffx.7402.1.S1_at

Description tigr:9639.m04075
TID=OsAffx.7402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4400011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43970Os.26546.1.S1_at11/1111+26046155..26052730AAA-type ATPase family protein, putative, expressed
LOC_Os11g43980Os.11563.1.S1_at11/1111+26065476..26067337Peroxidase 1 precursor, putative, expressed
LOC_Os11g43990Os.6129.1.S1_at11/1111+26070342..26075297expressed protein
LOC_Os11g44000OsAffx.7402.1.S1_at11/1111+26076954..26079793hypothetical protein
LOC_Os11g44000OsAffx.31466.1.S1_x_at1/1111+26076954..26079793hypothetical protein
LOC_Os11g44014OsAffx.28903.1.S1_x_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.7403.1.S1_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.28903.2.S1_x_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44014Os.31529.1.S1_at1/1111+26080547..26092483helicase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7402.1.S1_at--49--4551Chr11:26077485..26077509 (25 bp)
GCCCTGAGCCACGACAAGGAGGAGT
LOC_Os11g44000
OsAffx.7402.1.S1_at--1003--10612Chr11:26077575..26077599 (25 bp)
TTCGTCGCGTGGGAGCTGATCTCGT
LOC_Os11g44000
OsAffx.7402.1.S1_at--520--1592Chr11:26077588..26077612 (25 bp)
AGCTGATCTCGTGGTGGCTCACCAT
LOC_Os11g44000
OsAffx.7402.1.S1_at--753--1272Chr11:26077633..26077657 (25 bp)
AGATCGTCGGCGACCTGTCCATCGT
LOC_Os11g44000
OsAffx.7402.1.S1_at--379--8711Chr11:26077648..26077672 (25 bp)
TGTCCATCGTCGTCATGTTTTATGT
LOC_Os11g44000
OsAffx.7402.1.S1_at--917--731Chr11:26077662..26077686 (25 bp)
ATGTTTTATGTCTTTTGCTTCCTGC
LOC_Os11g44000
OsAffx.7402.1.S1_at--932--4271Chr11:26077682..26077706 (25 bp)
CCTGCTGCTGCTAATCGAAGAGGAA
LOC_Os11g44000
OsAffx.7402.1.S1_at--1006--5551Chr11:26077704..26077728 (25 bp)
GAAAGCCACTTCTACACTATCATCG
LOC_Os11g44000
OsAffx.7402.1.S1_at--347--3912Chr11:26077805..26077829 (25 bp)
CTGGATTGGTGTCCTTGCCTTGACT
LOC_Os11g44000
OsAffx.7402.1.S1_at--990--9171Chr11:26077820..26077844 (25 bp)
TGCCTTGACTGTTCTCCTTGGATAT
LOC_Os11g44000
OsAffx.7402.1.S1_at--488--10851Chr11:26077837..26077861 (25 bp)
TTGGATATCGCCTGCGACTCTACTC
LOC_Os11g44000
Target Sequence 
GCCCTGAGCCACGACAAGGAGGAGTACGCGCGCTGCTGCCGGATCACCATGGCCGTGCTCTCCTCCCTGATGCTGGTTGC
CCCCACGGTGTTCGTCGCGTGGGAGCTGATCTCGTGGTGGCTCACCATCGCCGACTTCCCCGTCGACGAGATCGTCGGCG
ACCTGTCCATCGTCGTCATGTTTTATGTCTTTTGCTTCCTGCTGCTGCTAATCGAAGAGGAAAGCCACTTCTACACTATC
ATCGCCGTCTTCCTGGTCGTCGCAGCTTTGCCCCTATTTTTCTCCATCGTCTTTGGTGATGCTGCCGCCATGGTGGTCTC
CTGGATTGGTGTCCTTGCCTTGACTGTTCTCCTTGGATATCGCCTGCGACTCTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis