Browse Element(s) Details


OsAffx.7403.1.S1_at

Description tigr:9639.m04077
TID=OsAffx.7403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4401411/11helicase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43980Os.11563.1.S1_at11/1111+26065476..26067337Peroxidase 1 precursor, putative, expressed
LOC_Os11g43990Os.6129.1.S1_at11/1111+26070342..26075297expressed protein
LOC_Os11g44000OsAffx.7402.1.S1_at11/1111+26076954..26079793hypothetical protein
LOC_Os11g44000OsAffx.31466.1.S1_x_at1/1111+26076954..26079793hypothetical protein
LOC_Os11g44014OsAffx.28903.1.S1_x_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.7403.1.S1_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.28903.2.S1_x_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44014Os.31529.1.S1_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44030OsAffx.7404.1.S1_at11/1111+26105486..26109668expressed protein
LOC_Os11g44040OsAffx.31464.1.S1_at11/1111+26110529..26112322hypothetical protein
LOC_Os11g44050NANA11+26116438..26119362retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7403.1.S1_at--1027--1051Chr11:26092422..26092446 (25 bp)
AGGGTGGGCATGGATCCACCTGCGT
LOC_Os11g44014
OsAffx.7403.1.S1_at--788--831Chr11:26092413..26092437 (25 bp)
ATGGATCCACCTGCGTGGGTGCTCG
LOC_Os11g44014
OsAffx.7403.1.S1_at--52--1771Chr11:26092405..26092429 (25 bp)
ACCTGCGTGGGTGCTCGGGCGATCG
LOC_Os11g44014
OsAffx.7403.1.S1_at--124--6151Chr11:26092365..26092389 (25 bp)
GAGGTGGATCCGACGACAGCTCCCG
LOC_Os11g44014
OsAffx.7403.1.S1_at--712--4791Chr11:26092347..26092371 (25 bp)
GCTCCCGCAATGACGACAACGGCTA
LOC_Os11g44014
OsAffx.7403.1.S1_at--840--5171Chr11:26092341..26092365 (25 bp)
GCAATGACGACAACGGCTACCACGA
LOC_Os11g44014
OsAffx.7403.1.S1_at--347--3191Chr11:26092340..26092364 (25 bp)
CAATGACGACAACGGCTACCACGAC
LOC_Os11g44014
OsAffx.7403.1.S1_at--121--7632Chr11:26091629..26091653 (25 bp)
GGGACAGGGCGCTCGGTCGCAGGAG
LOC_Os11g44014
OsAffx.7403.1.S1_at--124--4131Chr11:26091620..26091644 (25 bp)
CGCTCGGTCGCAGGAGGCGACGATG
LOC_Os11g44014
OsAffx.7403.1.S1_at--740--4571Chr11:26091572..26091596 (25 bp)
GCGCTCATCTCGGTCGCAGCAGGAG
LOC_Os11g44014
OsAffx.7403.1.S1_at--1123--3531Chr11:26091567..26091591 (25 bp)
CATCTCGGTCGCAGCAGGAGGTAGC
LOC_Os11g44014
Target Sequence 
AGGGTGGGCATGGATCCACCTGCGTGGGTGCTCGGGCGATCGCCCACGACGGTGAAGGAGGTGGATCCGACGACAGCTCC
CGCAATGACGACAACGGCTACCACGACTCCAATCCCCTCCCCTCTACTGCCTGGCGACCACGGTGGTGGTGGGGACAGGG
CGCTCGGTCGCAGGAGGCGACGATGGCGCGCAGGTGGTGGTGGGGACCGCGCTCATCTCGGTCGCAGCAGGAGGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis