Browse Element(s) Details


OsAffx.31464.1.S1_at

Description tigr:9639.m04079
TID=OsAffx.31464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4404011/11hypothetical protein
LOC_Os04g404501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44014OsAffx.28903.1.S1_x_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.7403.1.S1_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.28903.2.S1_x_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44014Os.31529.1.S1_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44030OsAffx.7404.1.S1_at11/1111+26105486..26109668expressed protein
LOC_Os11g44040OsAffx.31464.1.S1_at11/1111+26110529..26112322hypothetical protein
LOC_Os11g44050NANA11+26116438..26119362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44060NANA11+26119678..26122776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44070NANA11+26123098..26125788retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44084NANA11+26128267..26130912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44100Os.47463.1.S1_x_at3/1111+26131476..26133686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44100Os.14491.2.S1_x_at2/1111+26131476..26133686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44110OsAffx.7402.2.A1_x_at11/1111+26134489..26135327hypothetical protein
LOC_Os11g44110OsAffx.7402.2.A1_at11/1111+26134489..26135327hypothetical protein
LOC_Os11g44120OsAffx.19361.1.S1_at11/1111+26136604..26137073hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31464.1.S1_at--348--9511Chr11:26110560..26110584 (25 bp)
TCTCGCATCAGCTTATGCCATGGTA
LOC_Os11g44040
OsAffx.31464.1.S1_at--1039--9191Chr11:26110575..26110599 (25 bp)
TGCCATGGTATCTCGCAGTCATATT
LOC_Os11g44040
OsAffx.31464.1.S1_at--1028--7811Chr11:26110612..26110636 (25 bp)
GGTACAGATGGTGTTCCCTGTTTTC
LOC_Os11g44040
OsAffx.31464.1.S1_at--380--6811Chr11:26110631..26110967 (25 bp)
GTTTTCCTGCGGCTGATGCATAAAA
LOC_Os11g44040
OsAffx.31464.1.S1_at--352--1951Chr11:26111015..26111039 (25 bp)
ACTGGGTTATCAATTCTCACTTCAA
LOC_Os11g44040
OsAffx.31464.1.S1_at--1139--8031Chr11:26111052..26111076 (25 bp)
GGAGTTTTGGGACGCATACCTTCAA
LOC_Os11g44040
OsAffx.31464.1.S1_at--2--6911Chr11:26112025..26112049 (25 bp)
GTATCGTCTGTGCTGCTTGTAAGTT
LOC_Os11g44040
OsAffx.31464.1.S1_at--493--10791Chr11:26112041..26112065 (25 bp)
TTGTAAGTTCCTCCAGGGCGCAGTG
LOC_Os11g44040
OsAffx.31464.1.S1_at--293--3451Chr11:26112061..26112085 (25 bp)
CAGTGCGTTCCTATGGACCTGAGAG
LOC_Os11g44040
OsAffx.31464.1.S1_at--511--2491Chr11:26112094..26112118 (25 bp)
AACATCTTGAAGCACCGTACGACAA
LOC_Os11g44040
OsAffx.31464.1.S1_at--758--8773Chr11:26112175..26112199 (25 bp)
TGTTTGATCGATTCCATTCTTGCTG
LOC_Os11g44040
Target Sequence 
TCTCGCATCAGCTTATGCCATGGTATCTCGCAGTCATATTGATTTGTCAAGTGGTACAGATGGTGTTCCCTGTTTTCCTG
CGGCTGATGCATAAAAACATGGATAACGACGAGAGTCTTGTGTTCAAATTCAAAATGGTTTCCACTGGGTTATCAATTCT
CACTTCAATATATGATTGCTGGAGTTTTGGGACGCATACCTTCAATGATGGGAAGCGCAAGTGGTATATAGTGACAGTTT
GTATCGTCTGTGCTGCTTGTAAGTTCCTCCAGGGCGCAGTGCGTTCCTATGGACCTGAGAGGATGGCAAAACATCTTGAA
GCACCGTACGACAAAATGACTGATAAGCTAAATGCTATGAGAGGTGGAATCAAGCAAGCACGGGAGGATTTGTTTGATCG
ATTCCATTCTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis