Browse Element(s) Details


OsAffx.19361.1.S1_at

Description tigr:9639.m04087
TID=OsAffx.19361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4412011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44040OsAffx.31464.1.S1_at11/1111+26110529..26112322hypothetical protein
LOC_Os11g44050NANA11+26116438..26119362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44060NANA11+26119678..26122776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44070NANA11+26123098..26125788retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44084NANA11+26128267..26130912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44100Os.47463.1.S1_x_at3/1111+26131476..26133686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44100Os.14491.2.S1_x_at2/1111+26131476..26133686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44110OsAffx.7402.2.A1_x_at11/1111+26134489..26135327hypothetical protein
LOC_Os11g44110OsAffx.7402.2.A1_at11/1111+26134489..26135327hypothetical protein
LOC_Os11g44120OsAffx.19361.1.S1_at11/1111+26136604..26137073hypothetical protein
LOC_Os11g44130NANA11+26138464..26138790retrotransposon protein, putative, unclassified
LOC_Os11g44140NANA11+26143407..26144330retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44150OsAffx.22848.3.S1_x_at4/1111+26144854..26149365retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44150OsAffx.22848.4.S1_at1/1111+26144854..26149365retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19361.1.S1_at--1073--9311Chr11:26136635..26136659 (25 bp)
TCGCCCAAGCCGTGAAGGGCTACGA
LOC_Os11g44120
OsAffx.19361.1.S1_at--193--1091Chr11:26136650..26136674 (25 bp)
AGGGCTACGAGCAGGATGACGACGA
LOC_Os11g44120
OsAffx.19361.1.S1_at--988--5771Chr11:26136670..26136694 (25 bp)
GACGAGGACCCAACGCTGCAGGCAA
LOC_Os11g44120
OsAffx.19361.1.S1_at--244--9051Chr11:26136686..26136710 (25 bp)
TGCAGGCAAGGACGAACATTCTCAA
LOC_Os11g44120
OsAffx.19361.1.S1_at--426--8092Chr11:26136695..26136719 (25 bp)
GGACGAACATTCTCAACAAGGCCCT
LOC_Os11g44120
OsAffx.19361.1.S1_at--241--2231Chr11:26136710..26136734 (25 bp)
ACAAGGCCCTCGACCAAGTGCTCGA
LOC_Os11g44120
OsAffx.19361.1.S1_at--1104--3771Chr11:26136718..26136742 (25 bp)
CTCGACCAAGTGCTCGAGCTCGTCG
LOC_Os11g44120
OsAffx.19361.1.S1_at--135--4531Chr11:26136752..26136776 (25 bp)
GCCGCGACACGCAGGAGACAGCATT
LOC_Os11g44120
OsAffx.19361.1.S1_at--745--972Chr11:26136764..26136788 (25 bp)
AGGAGACAGCATTGCACACCCTGCA
LOC_Os11g44120
OsAffx.19361.1.S1_at--1094--4931Chr11:26136772..26136796 (25 bp)
GCATTGCACACCCTGCATCGGGAGG
LOC_Os11g44120
OsAffx.19361.1.S1_at--1011--4091Chr11:26136798..26137043 (25 bp)
CGCGGCCGAGGTGATAAGAGGATTC
LOC_Os11g44120
Target Sequence 
TCGCCCAAGCCGTGAAGGGCTACGAGCAGGATGACGACGAGGACCCAACGCTGCAGGCAAGGACGAACATTCTCAACAAG
GCCCTCGACCAAGTGCTCGAGCTCGTCGAGTCGTGCCGCCGCGACACGCAGGAGACAGCATTGCACACCCTGCATCGGGA
GGCCGCGGCCGAGGTGATAAGAGGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis