Browse Element(s) Details


Os.31529.1.S1_at

Description gb:AK107188.1
DB_XREF= gi:32992397
TID=Os.31529.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0682B08.17 (P0682B08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H11, full insert sequence.
FL= gb:AK107188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g318501/11Ureide permease 2, putative, expressed
LOC_Os11g440141/11helicase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g31820Os.47882.1.A1_at11/1112+19118818..19122389Phosphoserine phosphatase, putative, expressed
LOC_Os12g31830Os.50259.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830Os.17668.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830OsAffx.18661.1.S1_at1/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31840Os.17592.1.S1_at10/1112+19129531..19133065DnaJ domain containing protein, expressed
LOC_Os12g31850Os.28190.2.S1_s_at11/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31850Os.31529.1.S1_at1/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31860Os.49611.1.S1_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31860Os.17405.1.S1_a_at11/1112+19152133..19157385Ureide permease 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015720biological_processallantoin transport
GO:0015206molecular_functionallantoin transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31529.1.S1_at--188--1314Chr01:11073842..11073866 (25 bp)
AGATGTCCTGACATAGCGAGACTAA
NONE
Os.31529.1.S1_at--1044--5532Chr01:11073891..11073915 (25 bp)
GAAACTTCTTGCAATCCAAATGAGT
NONE
Os.31529.1.S1_at--1127--6071Chr01:11073912..11073936 (25 bp)
GAGTATTCTGTGTTCAGTGCTTTTA
NONE
Os.31529.1.S1_at--980--3311Chr01:11073985..11074009 (25 bp)
CACTTATATCTCGATTCTTCCATCT
NONE
Os.31529.1.S1_at--422--6892Chr01:11074098..11074122 (25 bp)
GTATACTACACTATATTCCTGTTTG
NONE
Os.31529.1.S1_at--615--8831Chr01:11074121..11074145 (25 bp)
TGATTTTTCATGTCTTTCAAGCAAT
NONE
Os.31529.1.S1_at--631--2131Chr01:11074149..11074173 (25 bp)
ACAGAGCTCCACATTATTGGTTTAT
NONE
Os.31529.1.S1_at--1008--6592Chr01:11074257..11074281 (25 bp)
GATTGTTCATACTTCAATGCACATT
NONE
Os.31529.1.S1_at--788--732Chr01:11074284..11074308 (25 bp)
ATGTTTTCTAATGTGCCCGCGGCAA
NONE
Os.31529.1.S1_at--463--9751Chr01:11074343..11074367 (25 bp)
TAATACCACACTCCAGAGCATGCTA
NONE
Os.31529.1.S1_at--295--5931Chr01:11074358..11074382 (25 bp)
GAGCATGCTAATCTGACAATTTGTT
NONE
Target Sequence 
AGATGTCCTGACATAGCGAGACTAATGTTGTGATTATGACTATAAATTTGAAACTTCTTGCAATCCAAATGAGTATTCTG
TGTTCAGTGCTTTTAGCAATTGATGCAAATATCACATTTAATTGCTCAAGTAGCAGAACTATTCACTTATATCTCGATTC
TTCCATCTATATTTTTTATACATTCTAATATTGTGTGCATATAGCTAAATCTAAAGGAGTTTTTGTTGTTTCTGATATTT
GCAGGTTTTTGAAATTGTATACTACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACAGAGCTCCACA
TTATTGGTTTATGAGCTTGATGCAGTTTCAAGTATTTCTTACTTGAGTACATATTTTGCCAATCAATTTTTTTTCATGTT
CAAACAATACAATCTGATTGTTCATACTTCAATGCACATTTCATGTTTTCTAATGTGCCCGCGGCAACGCGCGGGGCTTC
ATCTAGTATCAATTAGAATAATAATACCACACTCCAGAGCATGCTAATCTGACAATTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis