Browse Element(s) Details


Os.50259.1.S1_at

Description gb:AK120387.1
DB_XREF= gi:37990010
TID=Os.50259.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073J05, full insert sequence.
FL= gb:AK120387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3183011/11hydrolase, carbon-nitrogen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31790OsAffx.7757.1.S1_at10/1112+19097739..19101112expressed protein
LOC_Os12g31800Os.33730.1.S1_a_at11/1112+19101364..19105176RNA recognition motif family protein, expressed
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g31820Os.47882.1.A1_at11/1112+19118818..19122389Phosphoserine phosphatase, putative, expressed
LOC_Os12g31830Os.50259.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830Os.17668.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830OsAffx.18661.1.S1_at1/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31840Os.17592.1.S1_at10/1112+19129531..19133065DnaJ domain containing protein, expressed
LOC_Os12g31850Os.28190.2.S1_s_at11/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31850Os.31529.1.S1_at1/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31860Os.49611.1.S1_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31860Os.17405.1.S1_a_at11/1112+19152133..19157385Ureide permease 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0009446biological_processputrescine biosynthesis
GO:0000257molecular_functionnitrilase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0050126molecular_functionN-carbamoylputrescine amidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50259.1.S1_at--1125--6491Chr12:19122984..19123008 (25 bp)
GATATGCCATATGCTCTTGTTTTGT
LOC_Os12g31830
Os.50259.1.S1_at--950--3711Chr12:19123069..19123093 (25 bp)
CTAAGCTTTGCTGCCTTTGTAACAA
LOC_Os12g31830
Os.50259.1.S1_at--940--9811Chr12:19123088..19123112 (25 bp)
TAACAACTGTATTGATTGGCTTCTG
LOC_Os12g31830
Os.50259.1.S1_at--608--10851Chr12:19123103..19123127 (25 bp)
TTGGCTTCTGTTTCAGGGAACGGGC
LOC_Os12g31830
Os.50259.1.S1_at--145--2591Chr12:19123121..19123145 (25 bp)
AACGGGCAGGTGAATTTGTAGAGCA
LOC_Os12g31830
Os.50259.1.S1_at--469--5291Chr12:19123155..19123179 (25 bp)
GAATGGTGATGCTTTTGTTACTACA
LOC_Os12g31830
Os.50259.1.S1_at--410--9851Chr12:19123176..19123200 (25 bp)
TACAATGGGATTGTGCGGACGCAAC
LOC_Os12g31830
Os.50259.1.S1_at--379--4691Chr12:19123190..19123214 (25 bp)
GCGGACGCAACCATGCGTTGTTATT
LOC_Os12g31830
Os.50259.1.S1_at--861--9591Chr12:19123245..19123269 (25 bp)
TCATATTATATGACGCTTCGACTTT
LOC_Os12g31830
Os.50259.1.S1_at--1161--2491Chr12:19123316..19123340 (25 bp)
AACATAGCAACGTTTTCAACACAAA
LOC_Os12g31830
Os.50259.1.S1_at--747--10231Chr12:19123389..19123413 (25 bp)
TTTGGTGCTGTCGATGCTTCTAAAT
LOC_Os12g31830
Target Sequence 
GATATGCCATATGCTCTTGTTTTGTGGATAAACGTTAAGCAATGTGATGGTTCATCGGTGTAGAATGGATGGATCCGAGT
GGGAGCTAAGCTTTGCTGCCTTTGTAACAACTGTATTGATTGGCTTCTGTTTCAGGGAACGGGCAGGTGAATTTGTAGAG
CATTTGTGATTGAATGGTGATGCTTTTGTTACTACAATGGGATTGTGCGGACGCAACCATGCGTTGTTATTGTAGGGGAA
AACAAATATATTCCATCCGTTTCATATTATATGACGCTTCGACTTTTTTTCCTAGTCTAAACTTCTTTTAAGTTTGACTG
AGTTTATAAAAAAACATAGCAACGTTTTCAACACAAAACAAACATGTTATCAAAATATATACAATGCTAGATTTCATGAA
ACCAATTTGGTGCTGTCGATGCTTCTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis