Browse Element(s) Details


Os.49611.1.S1_at

Description gb:AK064238.1
DB_XREF= gi:32974256
TID=Os.49611.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A09, full insert sequence.
FL= gb:AK064238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3186011/11Ureide permease 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31830Os.50259.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830Os.17668.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830OsAffx.18661.1.S1_at1/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31840Os.17592.1.S1_at10/1112+19129531..19133065DnaJ domain containing protein, expressed
LOC_Os12g31850Os.28190.2.S1_s_at11/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31850Os.31529.1.S1_at1/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31860Os.49611.1.S1_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31860Os.17405.1.S1_a_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31870Os.55241.1.S1_x_at1/1112+19165110..19167503hypothetical protein
LOC_Os12g31880Os.38162.1.S2_at11/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31880Os.38162.1.S1_at11/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31880Os.12106.1.S1_at1/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31890OsAffx.19921.1.S1_at11/1112+19175578..19177768Ureide permease 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015720biological_processallantoin transport
GO:0015206molecular_functionallantoin transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49611.1.S1_at--560--2291Chr12:19154467..19154491 (25 bp)
AAATGTCATGACTAAACTGCAGAAA
LOC_Os12g31860
Os.49611.1.S1_at--1083--3831Chr12:19154451..19154475 (25 bp)
CTGCAGAAATTCAGGTGGAGCAATT
LOC_Os12g31860
Os.49611.1.S1_at--22--6071Chr12:19154418..19154442 (25 bp)
GAGTTGCTAGCAAAATTTCCACAAA
LOC_Os12g31860
Os.49611.1.S1_at--1029--5511Chr12:19154392..19154416 (25 bp)
GAAAATCCATGTATCTCTAAGGAAC
LOC_Os12g31860
Os.49611.1.S1_at--452--9831Chr12:19154361..19154385 (25 bp)
TAAAAATCTGACACAACCTTCCATG
LOC_Os12g31860
Os.49611.1.S1_at--86--5631Chr12:19154352..19154376 (25 bp)
GACACAACCTTCCATGTATTTCCAA
LOC_Os12g31860
Os.49611.1.S1_at--646--732Chr12:19154339..19154363 (25 bp)
ATGTATTTCCAACATACTCCCTCCG
LOC_Os12g31860
Os.49611.1.S1_at--105--2071Chr12:19154294..19154318 (25 bp)
GACTTTTTCCCCAGTTATACTTCAT
LOC_Os12g31860
Os.49611.1.S1_at--252--7051Chr12:19154066..19154090 (25 bp)
GTAAAATTCACACTTTCACAACAGA
LOC_Os12g31860
Os.49611.1.S1_at--556--5531Chr12:19154043..19154067 (25 bp)
GAAACACCAACTCAACAACATTAAT
LOC_Os12g31860
Os.49611.1.S1_at--844--3112Chr12:19154021..19154045 (25 bp)
AATTTGTTTCTTCTCCATGACACAA
LOC_Os12g31860
Target Sequence 
AAATGTCATGACTAAACTGCAGAAATTCAGGTGGAGCAATTGCAAAGCAGAGTTGCTAGCAAAATTTCCACAAATGAAAA
TCCATGTATCTCTAAGGAACTTTTTTTAAAAATCTGACACAACCTTCCATGTATTTCCAACATACTCCCTCCGTTTCATA
TTATAAGTCGTTTGACTTTTTCCCCAGTTATACTTCATTAAGTTTGATCAAGTTTATAGAAAAGTATAATAGTATTTTCA
ATAAAAGGCAAATGTATTATCAAAATATATTCAATATTAGATTTAATAATCTAATTCGATATTTTATATGTTACTAAGTT
TTCCTATATATTTAGTCAAACTTAACAAAGTTTGACTGAAAAAAATCGAACTGACTTATGATATAAAACGGGGGGGAAGC
AGTAAAATTCACACTTTCACAACAGAAACACCAACTCAACAACATTAATTTGTTTCTTCTCCATGACACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis