Browse Element(s) Details


Os.38162.1.S1_at

Description gb:AK099690.1
DB_XREF= gi:32984899
TID=Os.38162.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073D10, full insert sequence.
FL= gb:AK099690.1 gb:AK105377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3188011/11Eukaryotic translation initiation factor 5B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31860Os.49611.1.S1_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31860Os.17405.1.S1_a_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31870Os.55241.1.S1_x_at1/1112+19165110..19167503hypothetical protein
LOC_Os12g31880Os.38162.1.S2_at11/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31880Os.38162.1.S1_at11/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31880Os.12106.1.S1_at1/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31890OsAffx.19921.1.S1_at11/1112+19175578..19177768Ureide permease 2, putative, expressed
LOC_Os12g31900OsAffx.29680.1.S1_at1/1112+19183811..19185238Zinc knuckle family protein
LOC_Os12g31910OsAffx.19924.1.S1_at11/1112+19199776..19201249hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38162.1.S1_at--256--1251Chr12:19174479..19174503 (25 bp)
AGATTCTGCCAAACCGTGTATACCG
LOC_Os12g31880
Os.38162.1.S1_at--945--8771Chr12:19174943..19174967 (25 bp)
TGTTGGAGGCACAGTCCATGGTCTT
LOC_Os12g31880
Os.38162.1.S1_at--263--1391Chr12:19175153..19175177 (25 bp)
AGACCTGGTTGTATGGACGCCATTT
LOC_Os12g31880
Os.38162.1.S1_at--846--5891Chr12:19175191..19175215 (25 bp)
GAGCTGATCAGCCAAATCTCAAGGA
LOC_Os12g31880
Os.38162.1.S1_at--662--8051Chr12:19175213..19175237 (25 bp)
GGAGATCCATTGATGTCCTCAAAGA
LOC_Os12g31880
Os.38162.1.S1_at--729--5951Chr12:19175350..19175374 (25 bp)
GAGAATTGGCAGCTTATCCGCAGGC
LOC_Os12g31880
Os.38162.1.S1_at--788--11Chr12:19175404..19175428 (25 bp)
ATTGGAATACTTCTGTCGTCTTCTC
LOC_Os12g31880
Os.38162.1.S1_at--1103--4011Chr12:19175420..19175444 (25 bp)
CGTCTTCTCGTGTCGGCAATTTAGA
LOC_Os12g31880
Os.38162.1.S1_at--380--391Chr12:19175444..19175468 (25 bp)
ATCACGTTCATCATTTTCTGGTCTG
LOC_Os12g31880
Os.38162.1.S1_at--177--7411Chr12:19175468..19175492 (25 bp)
GTGTTGTGTCCAGAAACTCCAGTCA
LOC_Os12g31880
Os.38162.1.S1_at--674--2551Chr12:19175482..19175506 (25 bp)
AACTCCAGTCATACTTTGTCATCAT
LOC_Os12g31880
Target Sequence 
AGATTCTGCCAAACCGTGTATACCGTAAGAAGGATCCATTTCTTTGTGATGTTGAAGTCTTGGAAGGTGTCGTCAAGGTG
GGAACACCAATTTGTGTCTATGTTGGAGGCACAGTCCATGGTCTTGGAAGGATCTCCTCAATGCAAACATCAAATGGTAA
TCAGATTGATTCGGCAAAGCGAGGAGTAGTAGTATCCGTAAAGATAACCGGGGAGAGCCCCAAGGAGAAGACCTGGTTGT
ATGGACGCCATTTTGATGAGAGCAATGAGCTGATCAGCCAAATCTCAAGGAGATCCATTGATGTCCTCAAAGAGTACTAT
CGAGATGAAATGAATGATGAGAATTGGCAGCTTATCCGCAGGCTAAAGAAACTACTCGATATAGCCTGAAGGATTGGAAT
ACTTCTGTCGTCTTCTCGTGTCGGCAATTTAGATCACGTTCATCATTTTCTGGTCTGTGTTGTGTCCAGAAACTCCAGTC
ATACTTTGTCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis