Browse Element(s) Details


OsAffx.19924.1.S1_at

Description tigr:9640.m03094
TID=OsAffx.19924.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3191011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31880Os.38162.1.S2_at11/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31880Os.38162.1.S1_at11/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31880Os.12106.1.S1_at1/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31890OsAffx.19921.1.S1_at11/1112+19175578..19177768Ureide permease 2, putative, expressed
LOC_Os12g31900OsAffx.29680.1.S1_at1/1112+19183811..19185238Zinc knuckle family protein
LOC_Os12g31910OsAffx.19924.1.S1_at11/1112+19199776..19201249hypothetical protein
LOC_Os12g31920OsAffx.30226.2.S1_s_at2/1112+19204771..19208772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31930Os.14919.1.S1_at3/1112+19216618..19218245hypothetical protein
LOC_Os12g31930Os.56216.1.S1_at1/1112+19216618..19218245hypothetical protein
LOC_Os12g31940NANA12+19219170..19219760hypothetical protein
LOC_Os12g31950OsAffx.7758.1.S1_at10/1112+19225752..19227385NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19924.1.S1_at--220--3511Chr12:19200018..19200042 (25 bp)
CATGGTGGCATAATCCTAGGATCGT
LOC_Os12g31910
OsAffx.19924.1.S1_at--679--7951Chr12:19200036..19200060 (25 bp)
GGATCGTTCTAGACAATTTCTTGAT
LOC_Os12g31910
OsAffx.19924.1.S1_at--1000--8851Chr12:19200057..19200081 (25 bp)
TGATGCCTCTTAATCCTACAAGGGT
LOC_Os12g31910
OsAffx.19924.1.S1_at--341--2231Chr12:19200074..19200172 (25 bp)
ACAAGGGTCCATTCATCTCATGTTC
LOC_Os12g31910
OsAffx.19924.1.S1_at--135--4871Chr12:19200800..19200824 (25 bp)
GCTTTAGTCCTAGAAGCCGGTCTTC
LOC_Os12g31910
OsAffx.19924.1.S1_at--1041--7131Chr12:19200819..19200843 (25 bp)
GTCTTCTCCCAAATGGCGTTGCGAA
LOC_Os12g31910
OsAffx.19924.1.S1_at--570--3411Chr12:19200849..19200873 (25 bp)
CAGAGGTCATGGTCCTTGAGCGTGC
LOC_Os12g31910
OsAffx.19924.1.S1_at--275--3311Chr12:19201030..19201054 (25 bp)
CACACCGAGGATATTTGGCCAATTG
LOC_Os12g31910
OsAffx.19924.1.S1_at--1083--6271Chr12:19201057..19201081 (25 bp)
GATGTTCACTGGCAGCGATGTCGCT
LOC_Os12g31910
OsAffx.19924.1.S1_at--826--7571Chr12:19201182..19201206 (25 bp)
GGGCGGCACATAGGTACGTCTCCAT
LOC_Os12g31910
OsAffx.19924.1.S1_at--327--251Chr12:19201191..19201215 (25 bp)
ATAGGTACGTCTCCATGGGCGACAA
LOC_Os12g31910
Target Sequence 
CATGGTGGCATAATCCTAGGATCGTTCTAGACAATTTCTTGATGCCTCTTAATCCTACAAGGGTCCATTCATCTCATGTT
CTCGCCTTCATTCACCTGCAGGTCCTCTTCAAAGGGGAGGATCACGGCAGCGGCGGTGGTGGAGTGGAGGCTTTAGTCCT
AGAAGCCGGTCTTCTCCCAAATGGCGTTGCGAACGAGGCAGAGGTCATGGTCCTTGAGCGTGCGGCTGGTGCCCTCGTGG
ACAGAGAAGGACGCGGCGGTGCGCTCCAGGCTGAGAAGGACGCGGCCCAGCCCCTGCCCCTGTGGAACTCCTCGTCGCCG
CACTCATCCAACGGCCACCGCGTCGCGTCCGCGCCTGCACTCCCCTTGCCGCTGTACTCCACACCGAGGATATTTGGCCA
ATTGAGGATGTTCACTGGCAGCGATGTCGCTGCCCCTCCCCCACCACCACCAGCTCCCTCCCACGCCCTCGCGCCAGCGC
CGCCACCACCTCTCTTCCCGCCCTTCTACGTCATCCCCACAAGCGTCAGCGGGGCGGCACATAGGTACGTCTCCATGGGC
GACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis