Browse Element(s) Details


OsAffx.19921.1.S1_at

Description tigr:9640.m03090
TID=OsAffx.19921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=a3 protein. (cowpea
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3189011/11Ureide permease 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31860Os.49611.1.S1_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31860Os.17405.1.S1_a_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31870Os.55241.1.S1_x_at1/1112+19165110..19167503hypothetical protein
LOC_Os12g31880Os.38162.1.S2_at11/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31880Os.38162.1.S1_at11/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31880Os.12106.1.S1_at1/1112+19170759..19176652Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os12g31890OsAffx.19921.1.S1_at11/1112+19175578..19177768Ureide permease 2, putative, expressed
LOC_Os12g31900OsAffx.29680.1.S1_at1/1112+19183811..19185238Zinc knuckle family protein
LOC_Os12g31910OsAffx.19924.1.S1_at11/1112+19199776..19201249hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015720biological_processallantoin transport
GO:0015206molecular_functionallantoin transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19921.1.S1_at--850--5851Chr12:19176470..19176586 (25 bp)
GACCAAGGTGTGAAGTTGCTGCCAA
LOC_Os12g31890
OsAffx.19921.1.S1_at--773--1391Chr12:19176420..19176444 (25 bp)
AGACGACGATTTCGATACCGGCACC
LOC_Os12g31890
OsAffx.19921.1.S1_at--537--8251Chr12:19176401..19176425 (25 bp)
GGCACCGCAGAGTTCATCGTTCAGG
LOC_Os12g31890
OsAffx.19921.1.S1_at--688--9631Chr12:19176381..19176405 (25 bp)
TCAGGTTGAGAAGAGGCGATCCATC
LOC_Os12g31890
OsAffx.19921.1.S1_at--177--10231Chr12:19176252..19176276 (25 bp)
TTTGGCTCCAGCAGGTGGCTAGGAC
LOC_Os12g31890
OsAffx.19921.1.S1_at--915--10071Chr12:19176233..19176257 (25 bp)
TAGGACTGGGAATGGTGCTCCTCGC
LOC_Os12g31890
OsAffx.19921.1.S1_at--581--1091Chr12:19176155..19176179 (25 bp)
AGTGGCGCACCCTGAGAGACAGCGT
LOC_Os12g31890
OsAffx.19921.1.S1_at--7--7231Chr12:19176019..19176043 (25 bp)
GTCGACCATCGGAGCTTATGCCGGA
LOC_Os12g31890
OsAffx.19921.1.S1_at--94--9131Chr12:19175665..19175914 (25 bp)
TGCTGTCCAGTGGTACTTCTCATGG
LOC_Os12g31890
OsAffx.19921.1.S1_at--116--10571Chr12:19175649..19175673 (25 bp)
TTCTCATGGCTTCAGCAGCACATAG
LOC_Os12g31890
OsAffx.19921.1.S1_at--1006--2451Chr12:19175608..19175632 (25 bp)
AACACAGAAGGATTTCACTCCAGGA
LOC_Os12g31890
Target Sequence 
GACCAAGGTGTGAAGTTGCTGCCAAATCAAGAAGAACTGGAGAATGGCGAAGACGACGATTTCGATACCGGCACCGCAGA
GTTCATCGTTCAGGTTGAGAAGAGGCGATCCATCAAGGTGTTTGGCTCCAGCAGGTGGCTAGGACTGGGAATGGTGCTCC
TCGCCGGAGTCTGCTTCTCCCTCTTCTCGCCGGCGATCAACCTGGCCACCAACGACCAGTGGCGCACCCTGAGAGACAGC
GTCCCCCACCTGACGGTCTACACCGCCTTCTTCTACTTCTCCGTCTCGTGTTTCGCCGTCGGTATCGGCCTCAACGCCCG
GCTCCTCTACCGCCCGGTGGCCGGTGTACCGCCGTCGACCATCGGAGCTTATGCCGGAGACTGGAACGGCAGGCACTGGG
CGCTCCTGGCAGGGCTGCTCTGTGGGTTTGGCAATGGGTTCCAGTTCATGGGTGGGCAGGCTGCTGGATATGCAGCTGCT
GATGCTGTCCAGTGGTACTTCTCATGGCTTCAGCAGCACATAGGAAGACAGGGTAGTCCAACACAGAAGGATTTCACTCC
AGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis