Browse Element(s) Details


OsAffx.7758.1.S1_at

Description tigr:9640.m03098
TID=OsAffx.7758.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3195010/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31910OsAffx.19924.1.S1_at11/1112+19199776..19201249hypothetical protein
LOC_Os12g31920OsAffx.30226.2.S1_s_at2/1112+19204771..19208772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31930Os.14919.1.S1_at3/1112+19216618..19218245hypothetical protein
LOC_Os12g31930Os.56216.1.S1_at1/1112+19216618..19218245hypothetical protein
LOC_Os12g31940NANA12+19219170..19219760hypothetical protein
LOC_Os12g31950OsAffx.7758.1.S1_at10/1112+19225752..19227385NA
LOC_Os12g31960OsAffx.5724.1.S1_x_at1/1112+19232325..19235712retrotransposon protein, putative, LINE subclass
LOC_Os12g31969NANA12+19239100..19240021NA
LOC_Os12g31980NANA12+19245823..19249124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31990OsAffx.7693.1.S1_x_at1/1112+19250994..19252838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31990OsAffx.20020.1.S1_x_at1/1112+19250994..19252838transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7758.1.S1_at--1063--5171NONE
GCAATGGAGGCCGTCTGTTGAAAAC
NONE
OsAffx.7758.1.S1_at--626--2951Chr12:19226936..19227322 (25 bp)
AATGGAGGCCGTCTGTTGAAAACAG
LOC_Os12g31950
OsAffx.7758.1.S1_at--626--831Chr12:19226875..19226899 (25 bp)
ATGGATCTATGGTATTTTCTTCTTC
LOC_Os12g31950
OsAffx.7758.1.S1_at--396--451Chr12:19226871..19226895 (25 bp)
ATCTATGGTATTTTCTTCTTCCAGT
LOC_Os12g31950
OsAffx.7758.1.S1_at--953--9211Chr12:19226852..19226876 (25 bp)
TCCAGTTCAAAGTTGGCAATGGGTG
LOC_Os12g31950
OsAffx.7758.1.S1_at--608--2331Chr12:19226844..19226868 (25 bp)
AAAGTTGGCAATGGGTGTGGCTACA
LOC_Os12g31950
OsAffx.7758.1.S1_at--947--3191Chr12:19226836..19226860 (25 bp)
CAATGGGTGTGGCTACACTGCTACA
LOC_Os12g31950
OsAffx.7758.1.S1_at--65--7491Chr12:19226830..19226854 (25 bp)
GTGTGGCTACACTGCTACAGGGACA
LOC_Os12g31950
OsAffx.7758.1.S1_at--575--8311Chr12:19226826..19226850 (25 bp)
GGCTACACTGCTACAGGGACAACAT
LOC_Os12g31950
OsAffx.7758.1.S1_at--653--3331Chr12:19226821..19226845 (25 bp)
CACTGCTACAGGGACAACATTTGTC
LOC_Os12g31950
OsAffx.7758.1.S1_at--951--3451Chr12:19226813..19226837 (25 bp)
CAGGGACAACATTTGTCCTCCTTGG
LOC_Os12g31950
Target Sequence 
GCAATGGAGGCCGTCTGTTGAAAACAGAGGAAAGGCAAAAATTTAAAGGAAAAACAATCGTTTATGGATCTATGGTATTT
TCTTCTTCCAGTTCAAAGTTGGCAATGGGTGTGGCTACACTGCTACAGGGACAACATTTGTCCTCCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis