Browse Element(s) Details


Os.28190.2.S1_s_at

Description gb:AK058620.1
DB_XREF= gi:32968638
TID=Os.28190.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B07, full insert sequence.
FL= gb:AK058620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3185011/11Ureide permease 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g31820Os.47882.1.A1_at11/1112+19118818..19122389Phosphoserine phosphatase, putative, expressed
LOC_Os12g31830Os.50259.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830Os.17668.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830OsAffx.18661.1.S1_at1/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31840Os.17592.1.S1_at10/1112+19129531..19133065DnaJ domain containing protein, expressed
LOC_Os12g31850Os.28190.2.S1_s_at11/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31850Os.31529.1.S1_at1/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31860Os.49611.1.S1_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31860Os.17405.1.S1_a_at11/1112+19152133..19157385Ureide permease 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015720biological_processallantoin transport
GO:0015206molecular_functionallantoin transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28190.2.S1_s_at--875--3911Chr12:19134113..19134137 (25 bp)
CTGGCTTCCTATGTGGCTTTGGCAA
LOC_Os12g31850
Os.28190.2.S1_s_at--397--9651Chr12:19134082..19134106 (25 bp)
TCAGTTCATGGGTGGTCAGGCTGCT
LOC_Os12g31850
Os.28190.2.S1_s_at--171--9131Chr12:19133748..19134070 (25 bp)
TGCTGATGCTGTCCAGGCATTGCCA
LOC_Os12g31850
Os.28190.2.S1_s_at--270--8291Chr12:19133733..19133757 (25 bp)
GGCATTGCCACTTGTGAGCACATTC
LOC_Os12g31850
Os.28190.2.S1_s_at--340--8031Chr12:19133688..19133712 (25 bp)
GGAGTACCGGAAATCGTCGCGAAAG
LOC_Os12g31850
Os.28190.2.S1_s_at--451--2331Chr12:19133667..19133691 (25 bp)
AAAGACGTATATCCTGCTCGGGTTC
LOC_Os12g31850
Os.28190.2.S1_s_at--40--631Chr12:19133642..19133666 (25 bp)
ATGCTGTTCATGTTCATCGTCGCGG
LOC_Os12g31850
Os.28190.2.S1_s_at--683--9631Chr12:19133608..19133632 (25 bp)
TCATGGCTTCATCAGGTCACAGGAG
LOC_Os12g31850
Os.28190.2.S1_s_at--1058--2271Chr12:19133566..19133590 (25 bp)
AAATCCTTTCATCTCTTGCCTTAAT
LOC_Os12g31850
Os.28190.2.S1_s_at--1055--5131Chr12:19133526..19133550 (25 bp)
GCAAACCACTCTTGCTGTCAGAAAA
LOC_Os12g31850
Os.28190.2.S1_s_at--678--8111Chr12:19133472..19133496 (25 bp)
GGACTTCAGTCCAGGTCTCCAGGAA
LOC_Os12g31850
Target Sequence 
CTGGCTTCCTATGTGGCTTTGGCAATGGGTTTCAGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTC
CAGGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACCGGAAATCGTCGCGAAAGACGTATAT
CCTGCTCGGGTTCATGCTGTTCATGTTCATCGTCGCGGTCGCGGTGCTCATGGCTTCATCAGGTCACAGGAGCACCAAGT
GATTGATTCAAATCCTTTCATCTCTTGCCTTAATTTGGTGTTTGCAAGCGCAAACCACTCTTGCTGTCAGAAAACAAAGA
AGTTCAGGCAGCAATGCAGGGGGGGACTTCAGTCCAGGTCTCCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28190.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis