Browse Element(s) Details


Os.47882.1.A1_at

Description gb:AK111001.1
DB_XREF= gi:32996210
TID=Os.47882.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E12, full insert sequence.
FL= gb:AK111001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3182011/11Phosphoserine phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31770Os.55616.1.S1_at11/1112+19090750..19093994expressed protein
LOC_Os12g31770OsAffx.31487.1.S1_at4/1112+19090750..19093994expressed protein
LOC_Os12g31780Os.6837.1.S1_at11/1112+19093206..19095831Nitrilase-associated protein, putative, expressed
LOC_Os12g31790OsAffx.7757.1.S1_at10/1112+19097739..19101112expressed protein
LOC_Os12g31800Os.33730.1.S1_a_at11/1112+19101364..19105176RNA recognition motif family protein, expressed
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g31820Os.47882.1.A1_at11/1112+19118818..19122389Phosphoserine phosphatase, putative, expressed
LOC_Os12g31830Os.50259.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830Os.17668.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830OsAffx.18661.1.S1_at1/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31840Os.17592.1.S1_at10/1112+19129531..19133065DnaJ domain containing protein, expressed
LOC_Os12g31850Os.28190.2.S1_s_at11/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31850Os.31529.1.S1_at1/1112+19133173..19136731Ureide permease 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004647molecular_functionphosphoserine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47882.1.A1_at--379--8531Chr12:19119958..19119982 (25 bp)
TGGTTACAGGACACTCTTTATGGTT
LOC_Os12g31820
Os.47882.1.A1_at--976--1391Chr12:19119252..19119276 (25 bp)
AGACTTGTTTATCTGCTATGCTGGT
LOC_Os12g31820
Os.47882.1.A1_at--124--5551Chr12:19119131..19119155 (25 bp)
GAAACCACCAGTTCTTATTTTGTCT
LOC_Os12g31820
Os.47882.1.A1_at--1011--9791Chr12:19119093..19119117 (25 bp)
TAACTGTCCATGGAAGCACTTCAGA
LOC_Os12g31820
Os.47882.1.A1_at--1152--5951Chr12:19119070..19119094 (25 bp)
GAGAATCAGAGCTACACATGTCAAG
LOC_Os12g31820
Os.47882.1.A1_at--37--2451Chr12:19118989..19119013 (25 bp)
AAAATTCCTCTATCTTTCTATCAAT
LOC_Os12g31820
Os.47882.1.A1_at--590--10391Chr12:19118965..19118989 (25 bp)
TTTTCCTTTTCAAGCCAATGGCACC
LOC_Os12g31820
Os.47882.1.A1_at--570--6111Chr12:19118931..19118955 (25 bp)
GAGTGTCAATACTTACCTTGTGTGT
LOC_Os12g31820
Os.47882.1.A1_at--524--7411Chr12:19118900..19118924 (25 bp)
GTGATTTATCATTGGCCTGTTCAGA
LOC_Os12g31820
Os.47882.1.A1_at--796--7991Chr12:19118868..19118892 (25 bp)
GGATGTCACCCTAGATTGATGCCTT
LOC_Os12g31820
Os.47882.1.A1_at--949--6591Chr12:19118855..19118879 (25 bp)
GATTGATGCCTTCACAGATGTTGTA
LOC_Os12g31820
Target Sequence 
TGGTTACAGGACACTCTTTATGGTTGGAGATGGTGCAACTGATCTTGAGGCTCNGCAACCTAATGGAGCAGACTTGTTTA
TCTGCTATGCTGGTGTGCAGATGAGGGAAGNGGTTGCATCAAAAGCCGATTGGTTGATCTTTGATTTTGACGAACTAATG
GGCTANTTGGTTTAGGTTTTTTTTTTCCTAGAAACCACCAGTTCTTATTTTGTCTATTGATGAGTAAATAACTGTCCATG
GAAGCACTTCAGAGAATCAGAGCTACACATGTCAAGGCGTTTAACAGGGATAGTAATAACATGTGTCAAGCGAAGGTGTT
TGATCTCANGTTAAAAATTCCTCTATCTTTCTATCAATTTTCCTTTTCAAGCCAATGGCACCAAGATTCCAGAGTGTCAA
TACTTACCTTGTGTGTTGTTTTGTGATTTATCATTGGCCTGTTCAGAACAGGGAGGATGTCACCCTAGATTGATGCCTTC
ACAGATGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47882.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis