Browse Element(s) Details


OsAffx.7757.1.S1_at

Description tigr:9640.m03080
TID=OsAffx.7757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3179010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31748Os.57420.1.S1_at11/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31748Os.25415.1.A1_s_at9/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31770Os.55616.1.S1_at11/1112+19090750..19093994expressed protein
LOC_Os12g31770OsAffx.31487.1.S1_at4/1112+19090750..19093994expressed protein
LOC_Os12g31780Os.6837.1.S1_at11/1112+19093206..19095831Nitrilase-associated protein, putative, expressed
LOC_Os12g31790OsAffx.7757.1.S1_at10/1112+19097739..19101112expressed protein
LOC_Os12g31800Os.33730.1.S1_a_at11/1112+19101364..19105176RNA recognition motif family protein, expressed
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g31820Os.47882.1.A1_at11/1112+19118818..19122389Phosphoserine phosphatase, putative, expressed
LOC_Os12g31830Os.50259.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830Os.17668.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830OsAffx.18661.1.S1_at1/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7757.1.S1_at--981--3211Chr12:19100861..19100885 (25 bp)
CAAGGTGATTTTGCTCTGCTTTGCT
LOC_Os12g31790
OsAffx.7757.1.S1_at--1045--10271Chr12:19100837..19100861 (25 bp)
TTTGCTCGTTGCTGGTGCTCCTGAT
LOC_Os12g31790
OsAffx.7757.1.S1_at--226--571Chr12:19100790..19100813 (24 bp)
ATCCTCGGCGATGCTGTTTTGTCAA
LOC_Os12g31790
OsAffx.7757.1.S1_at--1029--8731NONE
TGTCAATTGGTGGATCTCATTCTTG
NONE
OsAffx.7757.1.S1_at--980--10551Chr12:19098097..19098121 (25 bp)
TTCTTGACCAGAGGGTGCAGTCGCT
LOC_Os12g31790
OsAffx.7757.1.S1_at--530--5451Chr12:19098071..19098095 (25 bp)
GAACGTGAACTAGATGCTGCCATTT
LOC_Os12g31790
OsAffx.7757.1.S1_at--463--9111Chr12:19098042..19098066 (25 bp)
TGCTGCCCGAGCTCGTACAGAGAAA
LOC_Os12g31790
OsAffx.7757.1.S1_at--879--2591Chr12:19097998..19098022 (25 bp)
AACGAGCTGCGGAGTTACGTGCGCA
LOC_Os12g31790
OsAffx.7757.1.S1_at--1059--9931Chr12:19097983..19098007 (25 bp)
TACGTGCGCAGGAAGTGACCAAGGA
LOC_Os12g31790
OsAffx.7757.1.S1_at--200--3731Chr12:19097837..19097861 (25 bp)
CTACACATGGAAGAGTTGCGGGCAA
LOC_Os12g31790
OsAffx.7757.1.S1_at--633--1451Chr12:19097769..19097793 (25 bp)
AGAAGCAATAATTCGAACCCTGAGT
LOC_Os12g31790
Target Sequence 
CAAGGTGATTTTGCTCTGCTTTGCTTTGCTCGTTGCTGGTGCTCCTGATTCGCCCCCAATCCCTTCGCCGGTATCCTCGG
CGATGCTGTTTTGTCAATTGGTGGATCTCATTCTTGACCAGAGGGTGCAGTCGCTGGAACGTGAACTAGATGCTGCCATT
TCTGCTGCTGCCCGAGCTCGTACAGAGAAACGCCAAGCTGAAGCTGCTCAACGAGCTGCGGAGTTACGTGCGCAGGAAGT
GACCAAGGAATTGGAGAACACTGCAAAAGTGTTCAAGCTACACATGGAAGAGTTGCGGGCAAAGCAAGAGGAGATTGCAA
AGAAAGAAAGTGATATCAAGGTGTTAGAAGCAATAATTCGAACCCTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis