Browse Element(s) Details


Os.25415.1.A1_s_at

Description gb:BX901738
DB_XREF= gi:40491881
DB_XREF=BX901738
CLONE=p732c02p3
TID=Os.25415.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25415 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g317489/11K-box region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31700Os.35344.3.S1_x_at5/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700Os.35344.18.S1_x_at4/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700OsAffx.22940.5.S1_x_at1/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31710Os.57313.1.S1_at10/1112+19060571..19064397universal stress protein family protein, expressed
LOC_Os12g31729OsAffx.31967.1.S1_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.18.S1_x_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.3.S1_x_at9/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_x_at4/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_at3/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31748Os.57420.1.S1_at11/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31748Os.25415.1.A1_s_at9/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31770Os.55616.1.S1_at11/1112+19090750..19093994expressed protein
LOC_Os12g31770OsAffx.31487.1.S1_at4/1112+19090750..19093994expressed protein
LOC_Os12g31780Os.6837.1.S1_at11/1112+19093206..19095831Nitrilase-associated protein, putative, expressed
LOC_Os12g31790OsAffx.7757.1.S1_at10/1112+19097739..19101112expressed protein
LOC_Os12g31800Os.33730.1.S1_a_at11/1112+19101364..19105176RNA recognition motif family protein, expressed
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010154biological_processfruit development
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25415.1.A1_s_at--1144--9891Chr12:19078101..19078125 (25 bp)
TACTGAACTGGAGACACTGCATACA
LOC_Os12g31748
Os.25415.1.A1_s_at--129--9071NONE
TGCATACAAGCATCAGGGCGTCACC
NONE
Os.25415.1.A1_s_at--122--1091NONE
AGGGCGTCACCCACTGAAGCTGCTG
NONE
Os.25415.1.A1_s_at--787--9112Chr12:19078026..19078050 (25 bp)
TGCTGATGCATTTGTTCCCAACCTC
LOC_Os12g31748
Os.25415.1.A1_s_at--848--3571Chr12:19078018..19078042 (25 bp)
CATTTGTTCCCAACCTCAACATCTG
LOC_Os12g31748
Os.25415.1.A1_s_at--287--2972Chr12:19077828..19077852 (25 bp)
AATGGCTTGCCATGGTGGATGCTCC
LOC_Os12g31748
Os.25415.1.A1_s_at--343--3511Chr12:19077818..19077842 (25 bp)
CATGGTGGATGCTCCAGTCATCATC
LOC_Os12g31748
Os.25415.1.A1_s_at--539--6751Chr12:19077772..19077796 (25 bp)
GTTCAGATGAAATGGTCCCTGCAGC
LOC_Os12g31748
Os.25415.1.A1_s_at--516--7911Chr12:19077739..19077763 (25 bp)
GGTTGCTGAATAATGTCGTCCCAGA
LOC_Os12g31748
Os.25415.1.A1_s_at--456--10671Chr12:19077574..19077598 (25 bp)
TTCCTGTGTTGTATTCAGCTGCATT
LOC_Os12g31748
Os.25415.1.A1_s_at--749--7411Chr12:19077569..19077593 (25 bp)
GTGTTGTATTCAGCTGCATTGGGAT
LOC_Os12g31748
Target Sequence 
TACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATACTGCTG
ATGCATTTGTTCCCAACCTCAACATCTGGCCATCAACTAAAACCGCAGTTGCGGCGATTCCGGCGAGCCGGAAACCGNGA
CGGNCGCCACTTGGCTGGACCAGCAGCNACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCNAACTTCTAGAGCTA
GNAGATGTTCAGATGAAATGGTCCCTGCAGCNCATTGCATATGGTTGCTGAATAATGTCGTCCCAGATGGCTAGGCAAGC
AACCTAGCTAGAACTTTCAGTTAGTGAGCAGTAGTACAGTGGTAGTACCGTGGTAGTATCTCCCCCTTCTTAATCCCTAA
GTAGATTGNAAGCATNTCCTATGCTGCTAGTTTTGATGAATTTCCTGTGTTGTATTCAGCTGCATTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25415.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis