Browse Element(s) Details


OsAffx.31967.1.S1_at

Description tigr:9640.m03073
TID=OsAffx.31967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3172910/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31660Os.52525.1.S1_at11/1112+19041293..19043885transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g31670OsAffx.19918.1.S1_at11/1112+19046562..19047050expressed protein
LOC_Os12g31680NANA12+19049108..19049794hypothetical protein
LOC_Os12g31690NANA12+19051176..19052056hypothetical protein
LOC_Os12g31700Os.35344.3.S1_x_at5/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700Os.35344.18.S1_x_at4/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700OsAffx.22940.5.S1_x_at1/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31710Os.57313.1.S1_at10/1112+19060571..19064397universal stress protein family protein, expressed
LOC_Os12g31729OsAffx.31967.1.S1_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.18.S1_x_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.3.S1_x_at9/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_x_at4/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_at3/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31748Os.57420.1.S1_at11/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31748Os.25415.1.A1_s_at9/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31770Os.55616.1.S1_at11/1112+19090750..19093994expressed protein
LOC_Os12g31770OsAffx.31487.1.S1_at4/1112+19090750..19093994expressed protein
LOC_Os12g31780Os.6837.1.S1_at11/1112+19093206..19095831Nitrilase-associated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31967.1.S1_at--61--8131Chr12:19066474..19066498 (25 bp)
GGACTTTGCCATTGCAGTGAACGAC
LOC_Os12g31729
OsAffx.31967.1.S1_at--666--5451Chr12:19066456..19066480 (25 bp)
GAACGACATGCTTGTCGGGCTCACA
LOC_Os12g31729
OsAffx.31967.1.S1_at--523--6791Chr12:19066393..19066417 (25 bp)
GTTTTCAGCTATGCCGGAACTTCCA
LOC_Os12g31729
OsAffx.31967.1.S1_at--379--10331Chr12:19066358..19066382 (25 bp)
TTTACATGGCTGACGCTGGAGTTCA
LOC_Os12g31729
OsAffx.31967.1.S1_at--890--10511Chr12:19066337..19066361 (25 bp)
TTCAGATAGCCGTCTTCGAATCCAT
LOC_Os12g31729
OsAffx.31967.1.S1_at--1052--5251Chr12:19066320..19066344 (25 bp)
GAATCCATCGATCTTGCATCTTGGC
LOC_Os12g31729
OsAffx.31967.1.S1_at--427--3031Chr12:19066283..19066307 (25 bp)
AATGCCCCAAGAGTAGCCATCTGAT
LOC_Os12g31729
OsAffx.31967.1.S1_at--790--7851Chr12:19066252..19066276 (25 bp)
GGTAGGAGCACAACTGCCACCAGAT
LOC_Os12g31729
OsAffx.31967.1.S1_at--128--1731Chr12:19066234..19066258 (25 bp)
ACCAGATCAGATGTGTCCTCTGTCT
LOC_Os12g31729
OsAffx.31967.1.S1_at--744--831Chr12:19066191..19066215 (25 bp)
ATGGATCTGACATCTGCCAACACGG
LOC_Os12g31729
OsAffx.31967.1.S1_at--239--9651Chr12:19065716..19066184 (25 bp)
TCAGATCGGGCAACCTAAGGGAGAT
NONE
Target Sequence 
GGACTTTGCCATTGCAGTGAACGACATGCTTGTCGGGCTCACACCACGTACCGCCACCCTCTCGCTGGTCAGACGTGCCC
CGTTTTCAGCTATGCCGGAACTTCCATGCCACCACATTTACATGGCTGACGCTGGAGTTCAGATAGCCGTCTTCGAATCC
ATCGATCTTGCATCTTGGCACCCCCGGAATCAATGCCCCAAGAGTAGCCATCTGATCGAGTTGGTAGGAGCACAACTGCC
ACCAGATCAGATGTGTCCTCTGTCTCTACATCCCTCTTTCCACATGGATCTGACATCTGCCAACACGGCCAACATCAGAT
CGGGCAACCTAAGGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis