Browse Element(s) Details


Os.52525.1.S1_at

Description gb:AK067652.1
DB_XREF= gi:32977670
TID=Os.52525.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013113E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013113E18, full insert sequence.
FL= gb:AK067652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3166011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31620Os.53963.1.S1_at11/1112+19015194..19020019NB-ARC domain containing protein, expressed
LOC_Os12g31630OsAffx.31965.1.S1_at11/1112+19023918..19025435expressed protein
LOC_Os12g31640Os.48088.1.S1_at11/1112+19027183..19032412Vacuolar protein sorting 26, putative, expressed
LOC_Os12g31650Os.2987.3.S1_x_at4/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31650Os.53731.1.S1_at1/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31660Os.52525.1.S1_at11/1112+19041293..19043885transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g31670OsAffx.19918.1.S1_at11/1112+19046562..19047050expressed protein
LOC_Os12g31680NANA12+19049108..19049794hypothetical protein
LOC_Os12g31690NANA12+19051176..19052056hypothetical protein
LOC_Os12g31700Os.35344.3.S1_x_at5/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700Os.35344.18.S1_x_at4/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700OsAffx.22940.5.S1_x_at1/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31710Os.57313.1.S1_at10/1112+19060571..19064397universal stress protein family protein, expressed
LOC_Os12g31729OsAffx.31967.1.S1_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.18.S1_x_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.3.S1_x_at9/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_x_at4/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_at3/1112+19066150..19070759Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52525.1.S1_at--91--7711Chr12:19041760..19041784 (25 bp)
GGGTGCTTAGGTCTGCTCAACTAAA
LOC_Os12g31660
Os.52525.1.S1_at--607--2971Chr12:19041737..19041761 (25 bp)
AATGGTTTTCGCATACCGATGGGCA
LOC_Os12g31660
Os.52525.1.S1_at--524--8571Chr12:19041693..19041717 (25 bp)
TGGATATGCCAACACGCCTTCATTC
LOC_Os12g31660
Os.52525.1.S1_at--220--4631Chr12:19041652..19041676 (25 bp)
GCGTTCGATACCATCTTAAGGAGTT
LOC_Os12g31660
Os.52525.1.S1_at--158--3931Chr12:19041614..19041638 (25 bp)
CGGCGCCCATCAAACTACAAATAAT
LOC_Os12g31660
Os.52525.1.S1_at--1146--5391Chr12:19041528..19041552 (25 bp)
GAAGCGCTTCCCGATCTTAAAAGTA
LOC_Os12g31660
Os.52525.1.S1_at--866--1191Chr12:19041507..19041531 (25 bp)
AGTAGGCACACTACACCCTATTGAA
LOC_Os12g31660
Os.52525.1.S1_at--528--4771Chr12:19041458..19041482 (25 bp)
GCTGCCGTATTTCACAACCTGATTA
LOC_Os12g31660
Os.52525.1.S1_at--158--8571Chr12:19041406..19041430 (25 bp)
TGGATCTTGATCATCAGCCACATGA
LOC_Os12g31660
Os.52525.1.S1_at--87--6371Chr12:19041383..19041407 (25 bp)
GATCCACACCATATATCACCTGAAG
LOC_Os12g31660
Os.52525.1.S1_at--719--2812Chr01:1683405..1683639 (25 bp)
AAGATTTTGTTGATGTTCCAGCGGG
NONE
Target Sequence 
GGGTGCTTAGGTCTGCTCAACTAAATGGTTTTCGCATACCGATGGGCAAGTTTTACCTTGTTGATGGTGGATATGCCAAC
ACGCCTTCATTCCTCGCACCTTACCGTGGCGTTCGATACCATCTTAAGGAGTTTGGTCGTGGTCACCGGCGCCCATCAAA
CTACAAATAATTGTTCAATCAAAGCCATGCATTATTGCGTAATCACATAGAAAGGGCTATTGGAGTTTTGAAGAAGCGCT
TCCCGATCTTAAAAGTAGGCACACTACACCCTATTGAAAACCAAGTTAGGATACCAGCAGCTGCTGCCGTATTTCACAAC
CTGATTAGGAGGTACAATGGGAATGAGGGATGGTTGGATCTTGATCATCAGCCACATGATCCACACCATATATCACCTGA
AGATTTTGTTGATGTTCCAGCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis