Browse Element(s) Details


Os.48088.1.S1_at

Description gb:AK073408.1
DB_XREF= gi:32983431
TID=Os.48088.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040F22, full insert sequence.
FL= gb:AK073408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3164011/11Vacuolar protein sorting 26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31610OsAffx.7756.1.S1_at10/1112+19007058..19010389Protein kinase domain containing protein
LOC_Os12g31620Os.53963.1.S1_at11/1112+19015194..19020019NB-ARC domain containing protein, expressed
LOC_Os12g31630OsAffx.31965.1.S1_at11/1112+19023918..19025435expressed protein
LOC_Os12g31640Os.48088.1.S1_at11/1112+19027183..19032412Vacuolar protein sorting 26, putative, expressed
LOC_Os12g31650Os.2987.3.S1_x_at4/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31650Os.53731.1.S1_at1/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31660Os.52525.1.S1_at11/1112+19041293..19043885transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g31670OsAffx.19918.1.S1_at11/1112+19046562..19047050expressed protein
LOC_Os12g31680NANA12+19049108..19049794hypothetical protein
LOC_Os12g31690NANA12+19051176..19052056hypothetical protein
LOC_Os12g31700Os.35344.3.S1_x_at5/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700Os.35344.18.S1_x_at4/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700OsAffx.22940.5.S1_x_at1/1112+19053506..19057451transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0042147biological_processretrograde transport, endosome to Golgi
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48088.1.S1_at--633--971Chr12:19031859..19031883 (25 bp)
AGGAGAATCCATCCCGGTGAGGCTA
LOC_Os12g31640
Os.48088.1.S1_at--612--10211Chr12:19031882..19031906 (25 bp)
TATTCTTGACGCCTTACGAGCTGAC
LOC_Os12g31640
Os.48088.1.S1_at--468--8931Chr12:19031903..19031927 (25 bp)
TGACCCCTTCGTATCGGAACATAAA
LOC_Os12g31640
Os.48088.1.S1_at--830--371Chr12:19032007..19032031 (25 bp)
ATCACCATGTATCGCCTTCTAGAAA
LOC_Os12g31640
Os.48088.1.S1_at--967--911Chr12:19032038..19032062 (25 bp)
AGGCTTCCTAGATTCCAAACTGGAG
LOC_Os12g31640
Os.48088.1.S1_at--1041--6271Chr12:19032069..19032093 (25 bp)
GATGTTTTTCGATTCTCAGGTTTTG
LOC_Os12g31640
Os.48088.1.S1_at--900--1071Chr12:19032114..19032138 (25 bp)
AGGGCAATGGCGTACTTACATGTAT
LOC_Os12g31640
Os.48088.1.S1_at--392--2771Chr12:19032150..19032174 (25 bp)
AAGAGCTCGGCAGTTCACTAGTGCT
LOC_Os12g31640
Os.48088.1.S1_at--648--10251Chr12:19032194..19032218 (25 bp)
TTTGTTTCTGTATCTTCTTGTCCTC
LOC_Os12g31640
Os.48088.1.S1_at--927--7251Chr12:19032213..19032237 (25 bp)
GTCCTCTGTGTGCTTATGGTAGACC
LOC_Os12g31640
Os.48088.1.S1_at--826--3051Chr12:19032300..19032324 (25 bp)
AATCTGTCCGAAGACCTTATGTGTA
LOC_Os12g31640
Target Sequence 
AGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCA
GCGTCAAGTACTACCTGAATCTGGTCCTTGNTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTAT
CGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAA
GCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTC
TCCNAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATA
TGTGCATTACCTCNCCCTGTTTATTTCTGTTTCTTGAAAGTAATCTGTCCGAAGACCTTATGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis