Browse Element(s) Details


Os.53963.1.S1_at

Description gb:AK101058.1
DB_XREF= gi:32986267
TID=Os.53963.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033021G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033021G15, full insert sequence.
FL= gb:AK101058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3162011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31600NANA12+18989104..18992436transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31610OsAffx.7756.1.S1_at10/1112+19007058..19010389Protein kinase domain containing protein
LOC_Os12g31620Os.53963.1.S1_at11/1112+19015194..19020019NB-ARC domain containing protein, expressed
LOC_Os12g31630OsAffx.31965.1.S1_at11/1112+19023918..19025435expressed protein
LOC_Os12g31640Os.48088.1.S1_at11/1112+19027183..19032412Vacuolar protein sorting 26, putative, expressed
LOC_Os12g31650Os.2987.3.S1_x_at4/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31650Os.53731.1.S1_at1/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31660Os.52525.1.S1_at11/1112+19041293..19043885transposon protein, putative, CACTA, En/Spm sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53963.1.S1_at--411--6231Chr12:19015726..19015750 (25 bp)
GATGGCACCATGGTTAACTTAACGT
LOC_Os12g31620
Os.53963.1.S1_at--79--6911Chr12:19015703..19015727 (25 bp)
GTATCTCAAACTTAGCCAACTGTGG
LOC_Os12g31620
Os.53963.1.S1_at--710--4991Chr12:19015673..19015697 (25 bp)
GCATGTTGTGCCGATAGGTCTTACA
LOC_Os12g31620
Os.53963.1.S1_at--601--251Chr12:19015649..19015673 (25 bp)
ATATCTGAAGATGCTCCACCACTTG
LOC_Os12g31620
Os.53963.1.S1_at--574--5571Chr12:19015618..19015642 (25 bp)
GAAAGTATGCCGGATGTCTTCATTA
LOC_Os12g31620
Os.53963.1.S1_at--315--4671Chr12:19015545..19015569 (25 bp)
GCGTGTGAGATTTACCTGATGCAAT
LOC_Os12g31620
Os.53963.1.S1_at--92--5191Chr12:19015525..19015549 (25 bp)
GCAATGTCTTCATCTTGTCCTTTGA
LOC_Os12g31620
Os.53963.1.S1_at--434--2452Chr12:23054910..23055262 (25 bp)
AAAATACTTCCATAATCTCTCTCTC
NONE
Os.53963.1.S1_at--701--8571Chr12:19015395..19015419 (25 bp)
TGGTTTCTCACAGCTGATCGGCTCT
LOC_Os12g31620
Os.53963.1.S1_at--614--9571Chr12:19015373..19015397 (25 bp)
TCTTCTCTCCTTTAGCTGATCTTTT
LOC_Os12g31620
Os.53963.1.S1_at--181--7351Chr12:19015337..19015361 (25 bp)
GTGACTTCCAAGTAAGGCCAAGGTG
LOC_Os12g31620
Target Sequence 
GATGGCACCATGGTTAACTTAACGTATCTCAAACTTAGCCAACTGTGGAATTTGCATGTTGTGCCGATAGGTCTTACATA
TCTGAAGATGCTCCACCACTTGTTTGCAGAAAGTATGCCGGATGTCTTCATTAGGGGCTTGGCACGTGAGGGGTTTCTTA
ACAACAGCATTATCATTGAATGCGTGTGAGATTTACCTGATGCAATGTCTTCATCTTGTCCTTTGATTCAAAATTCTTGT
TCCAAGTCAAGCATTAATAGGTTATAAATATCAGCATTGCATGTGTACACTTATTTTGAAAATACTTCCATAATCTCTCT
CTCGTGCTGGCTGGTTTCTCACAGCTGATCGGCTCTTCTCTCCTTTAGCTGATCTTTTTTTTTTTTTTGTGACTTCCAAG
TAAGGCCAAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis