Browse Element(s) Details


OsAffx.19918.1.S1_at

Description tigr:9640.m03068
TID=OsAffx.19918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3167011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31630OsAffx.31965.1.S1_at11/1112+19023918..19025435expressed protein
LOC_Os12g31640Os.48088.1.S1_at11/1112+19027183..19032412Vacuolar protein sorting 26, putative, expressed
LOC_Os12g31650Os.2987.3.S1_x_at4/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31650Os.53731.1.S1_at1/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31660Os.52525.1.S1_at11/1112+19041293..19043885transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g31670OsAffx.19918.1.S1_at11/1112+19046562..19047050expressed protein
LOC_Os12g31680NANA12+19049108..19049794hypothetical protein
LOC_Os12g31690NANA12+19051176..19052056hypothetical protein
LOC_Os12g31700Os.35344.3.S1_x_at5/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700Os.35344.18.S1_x_at4/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700OsAffx.22940.5.S1_x_at1/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31710Os.57313.1.S1_at10/1112+19060571..19064397universal stress protein family protein, expressed
LOC_Os12g31729OsAffx.31967.1.S1_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.18.S1_x_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.3.S1_x_at9/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_x_at4/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_at3/1112+19066150..19070759Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19918.1.S1_at--180--3391Chr12:19046808..19046832 (25 bp)
CAGCGGGCATCGTCCTACAACCAGG
LOC_Os12g31670
OsAffx.19918.1.S1_at--151--4671Chr12:19046810..19046834 (25 bp)
GCGGGCATCGTCCTACAACCAGGCG
LOC_Os12g31670
OsAffx.19918.1.S1_at--892--3931Chr12:19046864..19046888 (25 bp)
CGGCAGCCGGAGGAAGCGGGTGAAG
LOC_Os12g31670
OsAffx.19918.1.S1_at--771--7691Chr12:19046881..19046905 (25 bp)
GGGTGAAGACGTTCGTCATCAGGCT
LOC_Os12g31670
OsAffx.19918.1.S1_at--755--7351Chr12:19046883..19046907 (25 bp)
GTGAAGACGTTCGTCATCAGGCTCG
LOC_Os12g31670
OsAffx.19918.1.S1_at--780--8991Chr12:19046884..19046908 (25 bp)
TGAAGACGTTCGTCATCAGGCTCGT
LOC_Os12g31670
OsAffx.19918.1.S1_at--792--5351Chr12:19046885..19046909 (25 bp)
GAAGACGTTCGTCATCAGGCTCGTC
LOC_Os12g31670
OsAffx.19918.1.S1_at--50--2771Chr12:19046886..19046910 (25 bp)
AAGACGTTCGTCATCAGGCTCGTCG
LOC_Os12g31670
OsAffx.19918.1.S1_at--1007--9351Chr12:19046908..19046932 (25 bp)
TCGAGAAGGTCATCGGGCTGGAGAA
LOC_Os12g31670
OsAffx.19918.1.S1_at--451--7131Chr12:19046916..19046940 (25 bp)
GTCATCGGGCTGGAGAAGAACGGCC
LOC_Os12g31670
OsAffx.19918.1.S1_at--532--4671Chr12:19046953..19046977 (25 bp)
GCGGTGGGCGCAAGAAGAAAGGCAA
LOC_Os12g31670
Target Sequence 
CAGCGGGCATCGTCCTACAACCAGGCGCCGGTGGCGGCGTCGTCGCCGCGCGCGAGCGGCAGCCGGAGGAAGCGGGTGAA
GACGTTCGTCATCAGGCTCGTCGAGAAGGTCATCGGGCTGGAGAAGAACGGCCGCGGCGGCGGCGGCGGTGGGCGCAAGA
AGAAAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis