Browse Element(s) Details


Os.57420.1.S1_at

Description gb:AY250075.1
DB_XREF= gi:29825727
GEN=MADS20
TID=Os.57420.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57420 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS20 (MADS20) mRNA, complete cds.
PROD=MADS20
FL= gb:AY250075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3174811/11K-box region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31700Os.35344.3.S1_x_at5/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700Os.35344.18.S1_x_at4/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700OsAffx.22940.5.S1_x_at1/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31710Os.57313.1.S1_at10/1112+19060571..19064397universal stress protein family protein, expressed
LOC_Os12g31729OsAffx.31967.1.S1_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.18.S1_x_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.3.S1_x_at9/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_x_at4/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_at3/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31748Os.57420.1.S1_at11/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31748Os.25415.1.A1_s_at9/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31770Os.55616.1.S1_at11/1112+19090750..19093994expressed protein
LOC_Os12g31770OsAffx.31487.1.S1_at4/1112+19090750..19093994expressed protein
LOC_Os12g31780Os.6837.1.S1_at11/1112+19093206..19095831Nitrilase-associated protein, putative, expressed
LOC_Os12g31790OsAffx.7757.1.S1_at10/1112+19097739..19101112expressed protein
LOC_Os12g31800Os.33730.1.S1_a_at11/1112+19101364..19105176RNA recognition motif family protein, expressed
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010154biological_processfruit development
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57420.1.S1_at--621--2631Chr12:19077903..19078031 (25 bp)
AACCTCAACATCTGCTGCGGCGATT
LOC_Os12g31748
Os.57420.1.S1_at--50--4191Chr12:19077870..19077894 (25 bp)
CCGGAAACCGTGACGGCGCCACTTG
LOC_Os12g31748
Os.57420.1.S1_at--278--4791Chr12:19077808..19077832 (25 bp)
GCTCCAGTCATCATCGAACGGCAAG
LOC_Os12g31748
Os.57420.1.S1_at--51--4291Chr12:19077755..19077779 (25 bp)
CCTGCAGCCATTGCATGGTTGCTGA
LOC_Os12g31748
Os.57420.1.S1_at--675--10071Chr12:19077680..19077704 (25 bp)
TAGTGAGCGGTAGTAGTATCTCCCC
LOC_Os12g31748
Os.57420.1.S1_at--618--10531Chr12:19077654..19077678 (25 bp)
TTCTTAATCCCTACTATACTCCGTA
LOC_Os12g31748
Os.57420.1.S1_at--309--3151Chr12:19077625..19077649 (25 bp)
AATTCTAAGCATCCTTTTGTTTCCA
LOC_Os12g31748
Os.57420.1.S1_at--7--10271Chr12:19077610..19077634 (25 bp)
TTTGTTTCCATTATCTACGCTGCTG
LOC_Os12g31748
Os.57420.1.S1_at--170--10431Chr12:19077600..19077624 (25 bp)
TTATCTACGCTGCTGGTTTGATGAA
LOC_Os12g31748
Os.57420.1.S1_at--408--3611Chr12:19077553..19077577 (25 bp)
CATTGGGATCATTGCTCAGCCTTTG
LOC_Os12g31748
Os.57420.1.S1_at--142--7971Chr12:19077548..19077572 (25 bp)
GGATCATTGCTCAGCCTTTGGTCAT
LOC_Os12g31748
Target Sequence 
AACCTCAACATCTGCTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGG
CTTGCCATGGTGGATGCTCCAGTCATCATCGAACGGCAAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATT
GCATGGTTGCTGAATAATGTCGTCCCAGATGGTTAGGCAAGCAACCTACCTAGAACTTTCAGTTAGTGAGCGGTAGTAGT
ATCTCCCCCTTCTTAATCCCTACTATACTCCGTAGATTAATTCTAAGCATCCTTTTGTTTCCATTATCTACGCTGCTGGT
TTGATGAAATTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGCTCAGCCTTTGGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis