Browse Element(s) Details


Os.6837.1.S1_at

Description gb:AK060063.1
DB_XREF= gi:32970081
TID=Os.6837.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G12, full insert sequence.
FL= gb:AK060063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3178011/11Nitrilase-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31729OsAffx.31967.1.S1_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.18.S1_x_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.3.S1_x_at9/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_x_at4/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_at3/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31748Os.57420.1.S1_at11/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31748Os.25415.1.A1_s_at9/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31770Os.55616.1.S1_at11/1112+19090750..19093994expressed protein
LOC_Os12g31770OsAffx.31487.1.S1_at4/1112+19090750..19093994expressed protein
LOC_Os12g31780Os.6837.1.S1_at11/1112+19093206..19095831Nitrilase-associated protein, putative, expressed
LOC_Os12g31790OsAffx.7757.1.S1_at10/1112+19097739..19101112expressed protein
LOC_Os12g31800Os.33730.1.S1_a_at11/1112+19101364..19105176RNA recognition motif family protein, expressed
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g31820Os.47882.1.A1_at11/1112+19118818..19122389Phosphoserine phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6837.1.S1_at--825--7731Chr12:19093770..19093794 (25 bp)
GGTGGTTCATCACTTGACTATCTCT
LOC_Os12g31780
Os.6837.1.S1_at--268--8711Chr12:19093707..19093731 (25 bp)
TGTCCGGTTTACCATGAGCTCTGGA
LOC_Os12g31780
Os.6837.1.S1_at--791--7451Chr12:19093581..19093605 (25 bp)
GTGTCTGTGCTTATTCTGTGTTGAT
LOC_Os12g31780
Os.6837.1.S1_at--397--7331Chr12:19093548..19093572 (25 bp)
GTGCTTATCAGCAGCTACTTGTGCA
LOC_Os12g31780
Os.6837.1.S1_at--146--6751Chr12:19093508..19093532 (25 bp)
GTTCATCCTGTTGCATGTTAGTTCA
LOC_Os12g31780
Os.6837.1.S1_at--653--8171Chr12:19093482..19093506 (25 bp)
GGAACCGGGTCTTTATGCTAACATT
LOC_Os12g31780
Os.6837.1.S1_at--163--8791Chr12:19093425..19093449 (25 bp)
TGTTCTAGTTGTGTCATACCCCTCG
LOC_Os12g31780
Os.6837.1.S1_at--929--311Chr12:19093410..19093434 (25 bp)
ATACCCCTCGGATTGGACATGGTTG
LOC_Os12g31780
Os.6837.1.S1_at--939--2291Chr12:19093358..19093382 (25 bp)
AAATGTCTCTGTTCTGGGTGGCATA
LOC_Os12g31780
Os.6837.1.S1_at--1030--6491Chr12:19093328..19093352 (25 bp)
GATATGTTTTCCACATGACCCATGT
LOC_Os12g31780
Os.6837.1.S1_at--818--4011Chr12:19093255..19093279 (25 bp)
CGTACACTCGTACCCATTAGATTGG
LOC_Os12g31780
Target Sequence 
GGTGGTTCATCACTTGACTATCTCTTCAGTGGCAACAAGGATGGCAAGTGACGGTCACTCTGCTGTCCGGTTTACCATGA
GCTCTGGATGAAAGGTTTCTGCTCAACAAAAGCATGTTTTCCCATGAGTAACTAACTATCCAATGTATCTGCTCATGGTA
TGTCACAGAAACTGTTGTTATGTATGCATGTGTCTGTGCTTATTCTGTGTTGATGTATGCGTGTGCTTATCAGCAGCTAC
TTGTGCAATGAACTGATGGTATGTTCATCCTGTTGCATGTTAGTTCATGGAACCGGGTCTTTATGCTAACATTAATGTGC
TTGCTTCTTTAATGTATAATAACTGTGTTCTAGTTGTGTCATACCCCTCGGATTGGACATGGTTGTGGTTTGATGCTCAT
TGTTGAAGCAAGAAATGTCTCTGTTCTGGGTGGCATATTTGTGATATGTTTTCCACATGACCCATGTTCTGTGTGTTTGC
TGCTTTAATGTGTAATAACTGTGTTCTAGTTGTGTCGTACACTCGTACCCATTAGATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis