Browse Element(s) Details


Os.55616.1.S1_at

Description gb:AK108423.1
DB_XREF= gi:32993632
TID=Os.55616.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-A04, full insert sequence.
FL= gb:AK108423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3177011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31729OsAffx.31967.1.S1_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.18.S1_x_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.3.S1_x_at9/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_x_at4/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_at3/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31748Os.57420.1.S1_at11/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31748Os.25415.1.A1_s_at9/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31770Os.55616.1.S1_at11/1112+19090750..19093994expressed protein
LOC_Os12g31770OsAffx.31487.1.S1_at4/1112+19090750..19093994expressed protein
LOC_Os12g31780Os.6837.1.S1_at11/1112+19093206..19095831Nitrilase-associated protein, putative, expressed
LOC_Os12g31790OsAffx.7757.1.S1_at10/1112+19097739..19101112expressed protein
LOC_Os12g31800Os.33730.1.S1_a_at11/1112+19101364..19105176RNA recognition motif family protein, expressed
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g31820Os.47882.1.A1_at11/1112+19118818..19122389Phosphoserine phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55616.1.S1_at--60--10531Chr12:19091226..19091250 (25 bp)
TTCACCAGAGTTCGCGGCGTGCACG
LOC_Os12g31770
Os.55616.1.S1_at--1161--2351Chr12:19093697..19093721 (25 bp)
AAACCTTTCATCCAGAGCTCATGGT
LOC_Os12g31770
Os.55616.1.S1_at--426--1371Chr12:19093710..19093734 (25 bp)
AGAGCTCATGGTAAACCGGACAGCA
LOC_Os12g31770
Os.55616.1.S1_at--255--1771Chr12:19093724..19093748 (25 bp)
ACCGGACAGCAGAGTGACCGTCACT
LOC_Os12g31770
Os.55616.1.S1_at--547--4431Chr12:19093750..19093774 (25 bp)
GCCATCCTTGTTGCCACTGAAGAGA
LOC_Os12g31770
Os.55616.1.S1_at--497--1171Chr12:19093776..19093800 (25 bp)
AGTCAAGTGATGAACCACCGCCTGG
LOC_Os12g31770
Os.55616.1.S1_at--75--5751Chr12:19093820..19093844 (25 bp)
GACGGACGGTCCTGTGCAAACAAAA
LOC_Os12g31770
Os.55616.1.S1_at--1150--9811Chr12:19093863..19093887 (25 bp)
TAAAGCCTCAAATCGGACGCAATGC
LOC_Os12g31770
Os.55616.1.S1_at--539--4111Chr12:19093914..19093938 (25 bp)
CGAAGTGAGCTTGTGTGTTACGTAA
LOC_Os12g31770
Os.55616.1.S1_at--152--7051Chr12:19093935..19093959 (25 bp)
GTAAGGCATCTTAGCACGTTTCAGA
LOC_Os12g31770
Os.55616.1.S1_at--37--5091Chr12:19093948..19093972 (25 bp)
GCACGTTTCAGACCAGACAATGTAC
LOC_Os12g31770
Target Sequence 
TTCACCAGAGTTCGCGGCGTGCACGGCGAGCTCCTGCAGCGCGGCGAGCTCCTGGTGCACCATGACCGGCCGAGCCATCA
CCACCGCCGTCGCTTCCCAACGCCGCAACCAGCCGAAGCCGCCGCCGCAGTTGAAGTTGGATGGGGATTTCAGAAACCTT
TCATCCAGAGCTCATGGTAAACCGGACAGCAGAGTGACCGTCACTTGCCATCCTTGTTGCCACTGAAGAGATAGTCAAGT
GATGAACCACCGCCTGGAGCAGCCTGCACCTTGGTTGACGGACGGTCCTGTGCAAACAAAAGGGAAAGAAATGTCAGCAT
AAAGCCTCAAATCGGACGCAATGCAAGTAAGATCAATTGCAAAATGCTTACGAAGTGAGCTTGTGTGTTACGTAAGGCAT
CTTAGCACGTTTCAGACCAGACAATGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis