Browse Element(s) Details


Os.17592.1.S1_at

Description gb:AK109540.1
DB_XREF= gi:32994749
TID=Os.17592.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-G10, full insert sequence.
FL= gb:AK109540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3184010/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31800Os.33730.1.S1_a_at11/1112+19101364..19105176RNA recognition motif family protein, expressed
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g31820Os.47882.1.A1_at11/1112+19118818..19122389Phosphoserine phosphatase, putative, expressed
LOC_Os12g31830Os.50259.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830Os.17668.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830OsAffx.18661.1.S1_at1/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31840Os.17592.1.S1_at10/1112+19129531..19133065DnaJ domain containing protein, expressed
LOC_Os12g31850Os.28190.2.S1_s_at11/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31850Os.31529.1.S1_at1/1112+19133173..19136731Ureide permease 2, putative, expressed
LOC_Os12g31860Os.49611.1.S1_at11/1112+19152133..19157385Ureide permease 4, putative, expressed
LOC_Os12g31860Os.17405.1.S1_a_at11/1112+19152133..19157385Ureide permease 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17592.1.S1_at--838--391Chr12:19131116..19131140 (25 bp)
ATCAGCCTGAGGAATCCAGGCATAA
LOC_Os12g31840
Os.17592.1.S1_at--686--8511Chr12:19131170..19131194 (25 bp)
TGGAAGGTCCATCTTCTAATGAAGA
LOC_Os12g31840
Os.17592.1.S1_at--1015--9551Chr12:19131286..19131310 (25 bp)
TCTTCTGAACAAAAGGGTACATCGA
LOC_Os12g31840
Os.17592.1.S1_at--676--671Chr12:19132604..19132628 (25 bp)
ATGACTGTGAAACGTGTGGATCAAC
LOC_Os12g31840
Os.17592.1.S1_at--314--7511NONE
GTGGATCAACGTTTGACTCAAGGAA
NONE
Os.17592.1.S1_at--1152--5491Chr12:19132771..19132795 (25 bp)
GAACAAGTTGTTTTCTCACTTGGAA
LOC_Os12g31840
Os.17592.1.S1_at--386--6351Chr12:19132883..19132907 (25 bp)
GATGCTGATAGATTAGCACATCGAC
LOC_Os12g31840
Os.17592.1.S1_at--164--10411Chr12:19132939..19132963 (25 bp)
TTTTGATATGTGTAGTAGAGCCGTT
LOC_Os12g31840
Os.17592.1.S1_at--249--10011Chr12:19132954..19132978 (25 bp)
TAGAGCCGTTTTCTTTCTTCCTGGA
LOC_Os12g31840
Os.17592.1.S1_at--346--10571Chr12:19132964..19132988 (25 bp)
TTCTTTCTTCCTGGATTTGTTTCAT
LOC_Os12g31840
Os.17592.1.S1_at--956--9731Chr12:19133029..19133053 (25 bp)
TCAATCGAAATACACACCATCTTGT
LOC_Os12g31840
Target Sequence 
ATCAGCCTGAGGAATCCAGGCATAATAATGATGAAAATGGTGCTGATGATAAGATGGAAGGTCCATCTTCTAATGAAGAC
AGTGCTGCANCAAGTAAAGAAGATCAGCAGAAAGGAAAAACCGGTAATACTNAAAAGAACANNAAAGGCACAGAAAAGAA
CACNNNNAACTATATCTTCTGAACAAAAGGGTACATCGAAGGGAAAGAANCAAAAGGAGGTTTCAAAGNCACCCAGTAAT
GACTGTGAAACGTGTGGATCAACGTTTGACTCAAGGAACAAGTTGTTTTCTCACTTGGAAGAAACANGGTCATNCAATGC
TGAAGACACNGACAGAAAAATCGCTGAAGAGGACAAGAAAGTAGTTTTCTTTTACCGTTTGTCCCANGTTGATGCTGATA
GATTAGCACATCGACNAAAANGGCCATATATNTGGTTTATAGCCCAANTTTTGATATGTGTAGTAGAGCCGTTTTCTTTC
TTCCTGGATTTGTTTCATTGGTTTGTGGTACAGAATGACAAGAACTNATTATTATTATTCAATCGAAATACACACCATCT
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis