Browse Element(s) Details


OsAffx.7404.1.S1_at

Description tigr:9639.m04078
TID=OsAffx.7404.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4403011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44014OsAffx.28903.1.S1_x_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.7403.1.S1_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.28903.2.S1_x_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44014Os.31529.1.S1_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44030OsAffx.7404.1.S1_at11/1111+26105486..26109668expressed protein
LOC_Os11g44040OsAffx.31464.1.S1_at11/1111+26110529..26112322hypothetical protein
LOC_Os11g44050NANA11+26116438..26119362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44060NANA11+26119678..26122776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44070NANA11+26123098..26125788retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44084NANA11+26128267..26130912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44100Os.47463.1.S1_x_at3/1111+26131476..26133686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44100Os.14491.2.S1_x_at2/1111+26131476..26133686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44110OsAffx.7402.2.A1_x_at11/1111+26134489..26135327hypothetical protein
LOC_Os11g44110OsAffx.7402.2.A1_at11/1111+26134489..26135327hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7404.1.S1_at--32--9411Chr11:26106363..26106387 (25 bp)
TCGTCGTGATTTGGCTCGGTATTAT
LOC_Os11g44030
OsAffx.7404.1.S1_at--786--9991Chr11:26106387..26106411 (25 bp)
TAGCGCTCGCTGTCTTGTTTGGATA
LOC_Os11g44030
OsAffx.7404.1.S1_at--133--7951Chr11:26106407..26106431 (25 bp)
GGATATTCCGTCAGCATTTACTCTT
LOC_Os11g44030
OsAffx.7404.1.S1_at--215--3651Chr11:26106429..26106453 (25 bp)
CTTACTACACCCAGATTCAGACGAT
LOC_Os11g44030
OsAffx.7404.1.S1_at--397--6471Chr11:26106627..26106651 (25 bp)
GATAAGCTGGAGCACTCATCTTCCC
LOC_Os11g44030
OsAffx.7404.1.S1_at--499--1431Chr11:26109365..26109439 (25 bp)
AGAACACCCATCTATCCAAGGTTGC
LOC_Os11g44030
OsAffx.7404.1.S1_at--921--2171Chr11:26109492..26109516 (25 bp)
ACACTGGTGATCGACATGGGCTCAT
LOC_Os11g44030
OsAffx.7404.1.S1_at--538--8651Chr11:26109508..26109532 (25 bp)
TGGGCTCATCATATCTCAAGACCTG
LOC_Os11g44030
OsAffx.7404.1.S1_at--334--2771Chr11:26109525..26109549 (25 bp)
AAGACCTGTATGTTCGTGTTCGTGC
LOC_Os11g44030
OsAffx.7404.1.S1_at--137--7951Chr11:26109563..26109587 (25 bp)
GGATACCATTTTCGTCATCTATGAC
LOC_Os11g44030
OsAffx.7404.1.S1_at--135--5631Chr11:26109585..26109609 (25 bp)
GACACTATTTTGTGCCTGTTTACTG
LOC_Os11g44030
Target Sequence 
TCGTCGTGATTTGGCTCGGTATTATAGCGCTCGCTGTCTTGTTTGGATATTCCGTCAGCATTTACTCTTACTACACCCAG
ATTCAGACGATGAGGAGCAGCCAGCCACCGTCTGAGAAGGCGGATGCAGCGAAGCAAGAGCTTGATGAGATCAGCGGGGA
TAAGCTGGAGCACTCATCTTCCCCAGCAGCATCAACCCACGTTCACAGCAACCCGCATTCATCTGCATCCTCGTCAGCTG
AGGGCGTAGCGCCGACGCCTGCACCGGAGTACCTACTACCAGTAGCCAGGAAAGCTGAGAAGAACACCCATCTATCCAAG
GTTGCTTTTGGTGTTACGAAGAATTGGACGAGAGTGTTCGACTGTTTTGGAGGTGAAACACTGGTGATCGACATGGGCTC
ATCATATCTCAAGACCTGTATGTTCGTGTTCGTGCTGGGGATTAACAAGGATACCATTTTCGTCATCTATGACACTATTT
TGTGCCTGTTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis