Browse Element(s) Details


OsAffx.28903.2.S1_x_at

Description tigr:9636.m04166
TID=OsAffx.28903.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4107011/11expressed protein
LOC_Os07g446703/11hypothetical protein
LOC_Os11g440141/11helicase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40990Os.18230.1.S1_at9/118+25798050..25801190Leucine Rich Repeat family protein, expressed
LOC_Os08g41000OsAffx.6098.1.S1_at11/118+25801751..25803349expressed protein
LOC_Os08g41010Os.18529.2.S1_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41010Os.18529.1.S1_a_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41020NANA8+25810938..25815327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g41030Os.55500.1.S1_at11/118+25817415..25818314AP2 domain containing protein, expressed
LOC_Os08g41040Os.17091.1.S1_at11/118+25820114..25821925expressed protein
LOC_Os08g41054OsAffx.17446.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_x_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41070OsAffx.28903.2.S1_x_at11/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.2.S1_at10/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.1.S1_x_at7/118+25826008..25833843expressed protein
LOC_Os08g41070Os.50232.1.S1_x_at1/118+25826008..25833843expressed protein
LOC_Os08g41080Os.57155.1.S1_at3/118+25838216..25838446expressed protein
LOC_Os08g41090Os.17125.1.S1_at11/118+25838921..25842038Peroxidase family protein, expressed
LOC_Os08g41100Os.9173.1.S1_at11/118+25842624..25844598Chitinase class I family protein, expressed
LOC_Os08g41110Os.17116.1.S1_at11/118+25846641..25851174Chaperone protein dnaJ 10, putative, expressed
LOC_Os08g41120NANA8+25851411..25852436BTB/POZ domain containing protein
LOC_Os08g41130NANA8+25855367..25858078transposon protein, putative, Mutator sub-class
LOC_Os08g41140OsAffx.22940.2.S1_s_at11/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.1.S1_s_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_x_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.3.S1_x_at9/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.3.S1_x_at8/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.18.S1_x_at6/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.31552.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.2.S1_at1/118+25858437..25862921hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28903.2.S1_x_at--521--2251Chr08:25827301..25827325 (25 bp)
AAATCAACTTTATCATCCCCAACAA
LOC_Os08g41070
OsAffx.28903.2.S1_x_at--1087--8832Chr08:25827031..25827055 (25 bp)
TGATCAACAGCCATCGGGTCACAAG
LOC_Os08g41070
OsAffx.28903.2.S1_x_at--819--1753Chr11:26080716..26080740 (25 bp)
ACCTGCAAGCAGTTTCCAAGATTAC
LOC_Os11g44014
OsAffx.28903.2.S1_x_at--1123--1551Chr08:25826286..25826310 (25 bp)
AGCTATTTATATCACTCTCCAAGGG
LOC_Os08g41070
OsAffx.28903.2.S1_x_at--1112--9032Chr11:26080355..26080647 (25 bp)
TGCAGCCAACTCAAGCTCATGTTGT
NONE
OsAffx.28903.2.S1_x_at--1142--332Chr08:25826194..25826218 (25 bp)
ATAAACTTCCTCACATGCATATCAT
LOC_Os08g41070
OsAffx.28903.2.S1_x_at--482--6531Chr08:25826139..25826163 (25 bp)
GATTTAGACCTTACAGTTTCCTACT
LOC_Os08g41070
OsAffx.28903.2.S1_x_at--213--1211Chr08:25826125..25826149 (25 bp)
AGTTTCCTACTGTTTCCAGCTCATA
LOC_Os08g41070
OsAffx.28903.2.S1_x_at--90--8771Chr08:25826115..25826139 (25 bp)
TGTTTCCAGCTCATAGTATTACTAC
LOC_Os08g41070
OsAffx.28903.2.S1_x_at--773--133Chr11:26080488..26080512 (25 bp)
ATTACTACCTACCTACAGTTTGCTG
NONE
OsAffx.28903.2.S1_x_at--97--5013Chr11:26080431..26080455 (25 bp)
GCATGTGTTTCACTCAACTTATATT
NONE
Target Sequence 
AAATCAACTTTATCATCCCCAACAAGTAGATCTCAGCAAGGAAAAACAACCGTCAACAGAATTTTCTCCAGGACAAAATT
CTAAGTGCCATAAAAAAGTAACGGAAACCTCCACCAATGGAGAGGAAAACCAGCTGCAGCAGCCAAAGATAGCTGATCAA
CAGCCATCGGGTCACAAGGAACAGGAACCATGAGGCGCAACTCATCCACACCAACTACCTGCAAGCAGTTTCCAAGATTA
CTGCATCCAAATCAATAGCTATTTATATCACTCTCCAAGGGAAATCATCCACCGACGACCTCTCCAAGCTGCAGCCAACT
CAAGCTCATGTTGTGAATTACATGAAAAATAAACTTCCTCACATGCATATCATTCTCGATGGAGAAAATGTCACAAACAA
TGAGATTTAGACCTTACAGTTTCCTACTGTTTCCAGCTCATAGTATTACTACCTACCTACAGTTTGCTGTAATCAAATAA
ACAAAACTTAATTTTATATTTGCATGTGTTTCACTCAACTTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28903.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis