Browse Element(s) Details


Os.17116.1.S1_at

Description gb:AK105364.1
DB_XREF= gi:32990573
TID=Os.17116.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E12, full insert sequence.
FL= gb:AK105364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4111011/11Chaperone protein dnaJ 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41040Os.17091.1.S1_at11/118+25820114..25821925expressed protein
LOC_Os08g41054OsAffx.17446.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_x_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41070OsAffx.28903.2.S1_x_at11/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.2.S1_at10/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.1.S1_x_at7/118+25826008..25833843expressed protein
LOC_Os08g41070Os.50232.1.S1_x_at1/118+25826008..25833843expressed protein
LOC_Os08g41080Os.57155.1.S1_at3/118+25838216..25838446expressed protein
LOC_Os08g41090Os.17125.1.S1_at11/118+25838921..25842038Peroxidase family protein, expressed
LOC_Os08g41100Os.9173.1.S1_at11/118+25842624..25844598Chitinase class I family protein, expressed
LOC_Os08g41110Os.17116.1.S1_at11/118+25846641..25851174Chaperone protein dnaJ 10, putative, expressed
LOC_Os08g41120NANA8+25851411..25852436BTB/POZ domain containing protein
LOC_Os08g41130NANA8+25855367..25858078transposon protein, putative, Mutator sub-class
LOC_Os08g41140OsAffx.22940.2.S1_s_at11/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.1.S1_s_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_x_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.3.S1_x_at9/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.3.S1_x_at8/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.18.S1_x_at6/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.31552.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41150OsAffx.21997.5.S1_at11/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41150OsAffx.21997.3.S1_x_at1/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41160Os.47463.1.S1_x_at4/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41160Os.14491.2.S1_x_at3/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17116.1.S1_at--453--6211Chr08:25850657..25850681 (25 bp)
GAGGCCCCACAGTTTGGAGGAACCT
LOC_Os08g41110
Os.17116.1.S1_at--468--7991Chr08:25850672..25850696 (25 bp)
GGAGGAACCTATTACCCATTCAATT
LOC_Os08g41110
Os.17116.1.S1_at--447--131Chr08:25850689..25850713 (25 bp)
ATTCAATTTCCCAATGCCAACAGCT
LOC_Os08g41110
Os.17116.1.S1_at--636--7971Chr08:25850731..25850755 (25 bp)
GGATCCAATTCCATGACACCATTTA
LOC_Os08g41110
Os.17116.1.S1_at--1145--7391Chr08:25850813..25850837 (25 bp)
GTGATGCATCATTTGTACCTGTAGT
LOC_Os08g41110
Os.17116.1.S1_at--1009--2571Chr08:25850842..25850866 (25 bp)
AACGGAGGTTTAGCTATCCTTCGCA
LOC_Os08g41110
Os.17116.1.S1_at--551--571Chr08:25850857..25850881 (25 bp)
ATCCTTCGCACCATTTATTCGGTTG
LOC_Os08g41110
Os.17116.1.S1_at--884--1951Chr08:25850893..25850917 (25 bp)
ACTGGTCAGGTAGCAGCCGTGTACT
LOC_Os08g41110
Os.17116.1.S1_at--193--7451Chr08:25850921..25850945 (25 bp)
GTGTACAGTTGTTAACGCTCGTGTT
LOC_Os08g41110
Os.17116.1.S1_at--315--8591Chr08:25850976..25851000 (25 bp)
TGGTTTGGTGTTAATCTGCGGCCTC
LOC_Os08g41110
Os.17116.1.S1_at--157--6831Chr08:25851006..25851030 (25 bp)
GTTTAGCTTGACGTGCATCTTCTAT
LOC_Os08g41110
Target Sequence 
GAGGCCCCACAGTTTGGAGGAACCTATTACCCATTCAATTTCCCAATGCCAACAGCTCCACCTGGTGCGCAGAGGGATCC
AATTCCATGACACCATTTAAGCTTGCATGTGCTGTTGTTCTGTGCAATATTGCTGGTGAAATACTAGATCATTTGTGTGA
TGCATCATTTGTACCTGTAGTAGAGAACGGAGGTTTAGCTATCCTTCGCACCATTTATTCGGTTGTACAATCAGAGACTG
GTCAGGTAGCAGCCGTGTACTGTTGTGTACAGTTGTTAACGCTCGTGTTGAGGCAGTAGTAGGTCAGCATTGGTGTACAT
GGTTTGGTGTTAATCTGCGGCCTCGTTCCGTTTAGCTTGACGTGCATCTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis