Browse Element(s) Details


OsAffx.21997.3.S1_x_at

Description tigr:9636.m04096
TID=OsAffx.21997.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4049011/11BTB/POZ domain containing protein
LOC_Os08g411501/11BTB/POZ domain containing protein
LOC_Os08g411801/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450Os.18951.1.S1_at11/118+25460280..25464101UvrB/uvrC motif family protein, expressed
LOC_Os08g40460OsAffx.29609.2.S1_x_at11/118+25466936..25468292BTB/POZ domain containing protein
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40500Os.55699.1.S1_at10/118+25495911..25496794expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21997.3.S1_x_at--506--8831Chr08:25482577..25482601 (25 bp)
TGATTCTGCGCGACGATCGCCATCA
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--503--8111Chr08:25482854..25482878 (25 bp)
GGACGCTTTGCCACCGAGAGACATA
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--966--2071Chr08:25482874..25482898 (25 bp)
ACATACTATCTCCTTCGTTTTTCAA
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--455--51Chr08:25482902..25482926 (25 bp)
ATTGTTCGCGGCAGCGGACAGGTTT
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--314--2131Chr08:25482919..25482943 (25 bp)
ACAGGTTTGCGTTGGACAGGCTGAA
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--1023--8334Chr08:25482937..25482961 (25 bp)
GGCTGAAGCTGATGTGCGCCCAGAA
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--298--1411Chr08:25482997..25483021 (25 bp)
AGACTCTGGCCTGTGCCGAGATGCA
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--190--1611Chr08:25483033..25483057 (25 bp)
AGCTGAAGAGCAGGTGCCTCGACTT
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--310--7291Chr08:25483046..25483070 (25 bp)
GTGCCTCGACTTCTTCGTTGAAGAG
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--1115--6911Chr08:25483089..25483113 (25 bp)
GTAGTCACTGGTGGTTACCTGCGTC
LOC_Os08g40490
OsAffx.21997.3.S1_x_at--836--10131Chr08:25483115..25483139 (25 bp)
TATGCAGGGTTTCCCATCTGTTATC
LOC_Os08g40490
Target Sequence 
TGATTCTGCGCGACGATCGCCATCACCCCATAGCCGTGCCGCCGCCGAACCTGGGCGGCCATCTCGCCGCCATGGTGGGC
AGCGCCGACGGCTCCGACGTGTCCTTCTCCGTCGGCGGCGAGACGCTCATCCGCGCGCACCGCGCCGTGCTCGCCGCGCG
CTCGCCGGTGTTCAGCGCGGAGCTCCTCGGCTCCATGGCGGAGGGCACCATGCCGTGCGTCACGCTGCACGACATCGAGC
CGGCGACGTTCAGAGCTCTCCTGCACTTCGTGTACACGGACGCTTTGCCACCGAGAGACATACTATCTCCTTCGTTTTTC
AAGAAATTGTTCGCGGCAGCGGACAGGTTTGCGTTGGACAGGCTGAAGCTGATGTGCGCCCAGAAGCTGTGGGAAAGCGT
GACAGTGGAGACGGTGGCGGAGACTCTGGCCTGTGCCGAGATGCACAGCTGCCCGGAGCTGAAGAGCAGGTGCCTCGACT
TCTTCGTTGAAGAGAACAACTTCAGGAAGGTGGTAGTCACTGGTGGTTACCTGCGTCTTATGCAGGGTTTCCCATCTGTT
ATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21997.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis